Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7069_RS10495 Genome accession   NZ_CP049864
Coordinates   2158591..2159622 (-) Length   343 a.a.
NCBI ID   WP_166297315.1    Uniprot ID   -
Organism   Lysobacter sp. HDW10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2153591..2164622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7069_RS10470 (G7069_10465) - 2153649..2154866 (+) 1218 WP_166297307.1 SH3 domain-containing protein -
  G7069_RS10480 (G7069_10475) csrA 2155063..2155266 (-) 204 WP_166297309.1 carbon storage regulator CsrA -
  G7069_RS10485 (G7069_10480) alaS 2155362..2158001 (-) 2640 WP_166297311.1 alanine--tRNA ligase -
  G7069_RS10490 (G7069_10485) - 2158083..2158607 (-) 525 WP_166297313.1 regulatory protein RecX -
  G7069_RS10495 (G7069_10490) recA 2158591..2159622 (-) 1032 WP_166297315.1 recombinase RecA Machinery gene
  G7069_RS10500 (G7069_10495) lexA 2159789..2160439 (-) 651 WP_166297317.1 transcriptional repressor LexA -
  G7069_RS10505 (G7069_10500) - 2160504..2161007 (-) 504 WP_166297319.1 CinA family protein -
  G7069_RS10510 (G7069_10505) mutS 2161147..2163750 (+) 2604 WP_166297737.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36955.47 Da        Isoelectric Point: 5.0548

>NTDB_id=428249 G7069_RS10495 WP_166297315.1 2158591..2159622(-) (recA) [Lysobacter sp. HDW10]
MEDNKQRALAAALSQIEKQFGKGSVMRMGDRNAEAVETIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKAGGTAAFIDAEHALDPIYAQKLGVNLDDLLLSQPDTGEQALEIADMLVRSNAVDIVVVDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVVFINQLRMKIGIMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGEIIDMAVEAKLVDKAGAWYSYGSERIGQGKENARQYLKDNPAIAQQL
EAALREKLVPEEAPRDAKDDAEA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=428249 G7069_RS10495 WP_166297315.1 2158591..2159622(-) (recA) [Lysobacter sp. HDW10]
ATGGAAGACAACAAGCAACGCGCCTTGGCGGCGGCACTGAGTCAGATTGAGAAGCAGTTTGGCAAAGGTTCGGTCATGCG
TATGGGCGACCGTAATGCAGAAGCCGTTGAAACCATCGGTACCGGTTCGCTGATGCTCGATATCGCACTTGGCATTGGTG
GTTTGCCGAAGGGCCGTGTTGTTGAAATCTATGGACCGGAATCGTCGGGTAAAACCACGTTGACCCTGCAAGCCATCGCA
GAATGCCAAAAGGCAGGTGGTACGGCAGCCTTTATCGACGCAGAGCACGCGCTTGATCCGATTTATGCACAAAAGCTGGG
CGTGAATCTGGATGACTTGCTGTTGTCGCAGCCCGACACAGGCGAGCAAGCCTTGGAAATCGCCGACATGTTGGTGCGTT
CGAACGCCGTGGATATCGTGGTCGTGGACTCCGTGGCAGCACTGACCCCGCGCGCTGAAATCGAAGGTGAAATGGGCGAC
CAATTGCCGGGTCTGCAAGCGCGTTTGATGAGCCAAGCCCTGCGTAAGCTCACGGGCAACATCAAGCGCAGCAACTGCTT
GGTGGTCTTCATCAATCAGCTGCGTATGAAGATCGGCATCATGATGCCGGGCCAAAGCCCGGAAGTGACGACGGGTGGTA
ACGCGTTGAAGTTCTATGCATCGGTTCGCTTGGATATTCGTCGTATCGGCGCGATCAAGAAGGGCGATGAAATCATCGGC
AACCAAACGCGCATCAAGGTCGTTAAGAACAAATTGGCACCGCCGTTCAAGCAAGTCGTGACGGAAATCCTTTATGGCGA
AGGTATTTCGCGTGAAGGCGAAATCATCGATATGGCTGTGGAAGCCAAGCTGGTTGATAAGGCCGGTGCGTGGTACAGCT
ACGGCAGCGAGCGCATTGGCCAAGGTAAAGAAAATGCACGTCAGTACCTGAAAGACAATCCGGCCATTGCGCAGCAGCTT
GAAGCTGCGCTCCGCGAAAAATTAGTGCCTGAAGAAGCACCGCGTGACGCGAAGGATGACGCAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.76

99.708

0.706
  recA Acinetobacter baylyi ADP1

70.588

99.125

0.7
  recA Ralstonia pseudosolanacearum GMI1000

70.326

98.251

0.691
  recA Vibrio cholerae strain A1552

70.783

96.793

0.685
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.783

96.793

0.685
  recA Acinetobacter baumannii D1279779

70.821

95.918

0.679
  recA Neisseria gonorrhoeae MS11

67.485

95.044

0.641
  recA Neisseria gonorrhoeae MS11

67.485

95.044

0.641
  recA Neisseria gonorrhoeae strain FA1090

67.485

95.044

0.641
  recA Glaesserella parasuis strain SC1401

67.178

95.044

0.638
  recA Latilactobacillus sakei subsp. sakei 23K

63.582

97.668

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

99.125

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.793

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

63.58

94.461

0.601
  recA Helicobacter pylori strain NCTC11637

60.542

96.793

0.586
  recA Helicobacter pylori 26695

60.241

96.793

0.583
  recA Streptococcus mitis SK321

58.309

100

0.583
  recA Streptococcus mutans UA159

60.856

95.335

0.58
  recA Streptococcus pneumoniae Rx1

60.061

95.627

0.574
  recA Streptococcus pneumoniae D39

60.061

95.627

0.574
  recA Streptococcus pneumoniae R6

60.061

95.627

0.574
  recA Streptococcus pneumoniae TIGR4

60.061

95.627

0.574
  recA Streptococcus mitis NCTC 12261

60.308

94.752

0.571
  recA Streptococcus pyogenes NZ131

59.394

96.21

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.154

94.752

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.306

92.42

0.548