Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7059_RS06785 Genome accession   NZ_CP049859
Coordinates   1332296..1333306 (-) Length   336 a.a.
NCBI ID   WP_166081334.1    Uniprot ID   -
Organism   Erysipelothrix sp. HDW6A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1327296..1338306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7059_RS06770 (G7059_06770) - 1328086..1329744 (-) 1659 WP_166081330.1 ribonuclease J -
  G7059_RS06775 (G7059_06775) - 1329840..1330604 (-) 765 WP_166081331.1 TIGR00282 family metallophosphoesterase -
  G7059_RS06780 (G7059_06780) rny 1330604..1332160 (-) 1557 WP_166081332.1 ribonuclease Y -
  G7059_RS06785 (G7059_06785) recA 1332296..1333306 (-) 1011 WP_166081334.1 recombinase RecA Machinery gene
  G7059_RS06790 (G7059_06790) pgsA 1333351..1333944 (-) 594 WP_166081335.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G7059_RS06795 (G7059_06795) - 1333946..1334860 (-) 915 WP_166081336.1 helix-turn-helix domain-containing protein -
  G7059_RS06805 (G7059_06805) - 1335336..1335653 (-) 318 WP_166081337.1 DivIVA domain-containing protein -
  G7059_RS06810 (G7059_06810) recU 1335778..1336356 (+) 579 WP_166081338.1 Holliday junction resolvase RecU -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36269.51 Da        Isoelectric Point: 5.1746

>NTDB_id=428198 G7059_RS06785 WP_166081334.1 1332296..1333306(-) (recA) [Erysipelothrix sp. HDW6A]
MANDNRDKVLDETIKQIEKQFGKGSIMKLGDRASVDIDAISSGSLALDAALGIGGYPKGRIIEIYGPESSGKTTLALHAI
AEVQKTGGKAAFIDAENAIDPIYARNLGVKIDELILSQPDSGEQALEIVDVLVRSGAVDLVVVDSVAALVPQAELDGEMG
DSNIGLQARMMSKAMRKLAGPMNRGNCTAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDIRRSEQIKQGTDVVGN
KANIKVVKNKVAPPFKAVQVEIVYGKGISFIGEVIDLGSEFDIINKSGSWYSYNGEKIGQGREAVRTYLEDNPKILDEVA
AQVRERMIVKDKTEEA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=428198 G7059_RS06785 WP_166081334.1 1332296..1333306(-) (recA) [Erysipelothrix sp. HDW6A]
ATGGCTAACGATAATAGAGATAAAGTGCTTGATGAAACAATTAAGCAAATAGAAAAGCAATTTGGTAAAGGTTCAATCAT
GAAACTAGGGGACCGAGCTTCAGTTGATATTGATGCAATTAGCTCGGGATCATTAGCTTTAGATGCTGCACTTGGTATTG
GTGGATATCCTAAAGGTCGTATTATCGAAATTTACGGTCCAGAATCCAGTGGTAAAACAACTCTAGCGCTCCATGCTATT
GCAGAAGTCCAAAAAACAGGTGGGAAAGCAGCTTTCATTGATGCTGAAAATGCGATTGATCCAATTTATGCACGTAATTT
AGGTGTTAAAATTGACGAACTAATCTTATCTCAACCAGATTCAGGAGAACAAGCATTAGAAATTGTTGATGTTCTTGTAC
GAAGTGGAGCGGTTGATTTAGTAGTTGTTGATAGTGTTGCTGCACTTGTACCACAAGCAGAGCTTGATGGCGAAATGGGC
GACTCTAACATCGGTTTACAGGCACGTATGATGTCAAAAGCAATGCGTAAACTAGCAGGTCCAATGAACCGCGGTAATTG
TACTGCAATCTTCATTAACCAATTACGTGAAAAAGTTGGAATTATGTTTGGTAACCCTGAAACAACACCAGGTGGTAGAG
CTTTAAAATTCTATTCATCTGTTCGTCTTGATATTCGTCGTTCCGAACAAATCAAACAAGGTACGGATGTTGTTGGTAAT
AAAGCCAACATTAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAAGGCAGTTCAAGTTGAAATTGTCTATGGTAAGGG
TATTTCCTTTATTGGAGAAGTTATCGACTTAGGTTCAGAGTTCGATATTATTAACAAGAGTGGATCATGGTATTCATACA
ATGGTGAAAAAATCGGACAAGGACGTGAAGCAGTACGTACTTATCTTGAAGATAATCCAAAAATATTGGATGAAGTTGCT
GCTCAGGTAAGAGAAAGAATGATAGTTAAAGATAAAACAGAAGAGGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

66.272

100

0.667
  recA Bacillus subtilis subsp. subtilis str. 168

69.255

95.833

0.664
  recA Streptococcus mitis SK321

66.567

99.702

0.664
  recA Streptococcus mitis NCTC 12261

68.731

96.131

0.661
  recA Latilactobacillus sakei subsp. sakei 23K

65.97

99.702

0.658
  recA Streptococcus pneumoniae R6

66.366

99.107

0.658
  recA Streptococcus pneumoniae TIGR4

66.366

99.107

0.658
  recA Streptococcus pneumoniae Rx1

66.366

99.107

0.658
  recA Streptococcus pneumoniae D39

66.366

99.107

0.658
  recA Streptococcus pyogenes NZ131

66.769

96.726

0.646
  recA Lactococcus lactis subsp. cremoris KW2

63.582

99.702

0.634
  recA Acinetobacter baylyi ADP1

60.117

100

0.61
  recA Neisseria gonorrhoeae MS11

62.539

96.131

0.601
  recA Neisseria gonorrhoeae MS11

62.539

96.131

0.601
  recA Neisseria gonorrhoeae strain FA1090

62.539

96.131

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

99.702

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.656

97.024

0.598
  recA Vibrio cholerae strain A1552

61.656

97.024

0.598
  recA Acinetobacter baumannii D1279779

61.162

97.321

0.595
  recA Ralstonia pseudosolanacearum GMI1000

63.023

92.56

0.583
  recA Pseudomonas stutzeri DSM 10701

58.383

99.405

0.58
  recA Glaesserella parasuis strain SC1401

59.259

96.429

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

96.429

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.589

97.024

0.568
  recA Helicobacter pylori strain NCTC11637

57.975

97.024

0.562
  recA Helicobacter pylori 26695

57.669

97.024

0.56