Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G7090_RS18410 Genome accession   NZ_CP049786
Coordinates   3852518..3853576 (-) Length   352 a.a.
NCBI ID   WP_166183686.1    Uniprot ID   A0AAJ4F763
Organism   Leclercia sp. 29361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3847518..3858576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7090_RS18395 (G7090_18395) csrA 3848751..3848936 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  G7090_RS18400 (G7090_18400) alaS 3849178..3851805 (-) 2628 WP_166183681.1 alanine--tRNA ligase -
  G7090_RS18405 (G7090_18405) recX 3851937..3852437 (-) 501 WP_166183683.1 recombination regulator RecX -
  G7090_RS18410 (G7090_18410) recA 3852518..3853576 (-) 1059 WP_166183686.1 recombinase RecA Machinery gene
  G7090_RS18415 (G7090_18415) pncC 3853663..3854160 (-) 498 WP_106994509.1 nicotinamide-nucleotide amidase -
  G7090_RS18420 (G7090_18420) mltB 3854334..3855428 (-) 1095 WP_207630084.1 lytic murein transglycosylase B -
  G7090_RS18425 (G7090_18425) srlA 3855697..3856260 (+) 564 WP_156264509.1 PTS glucitol/sorbitol transporter subunit IIC -
  G7090_RS18430 (G7090_18430) - 3856257..3857216 (+) 960 WP_166183690.1 PTS glucitol/sorbitol transporter subunit IIB -
  G7090_RS18435 (G7090_18435) srlB 3857229..3857591 (+) 363 WP_166183692.1 PTS glucitol/sorbitol transporter subunit IIA -
  G7090_RS18440 (G7090_18440) srlD 3857607..3858386 (+) 780 WP_166183694.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37871.30 Da        Isoelectric Point: 4.8819

>NTDB_id=427812 G7090_RS18410 WP_166183686.1 3852518..3853576(-) (recA) [Leclercia sp. 29361]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPQFAVDGENAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=427812 G7090_RS18410 WP_166183686.1 3852518..3853576(-) (recA) [Leclercia sp. 29361]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGATCGTTCCATGGATGTAGAAACTATCTCCACCGGTTCGCTTTCTCTGGATATTGCACTGGGTG
CTGGCGGCCTGCCTATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACCTTACAGGTT
GTGGCGGCAGCACAGCGCGAAGGCAAAACCTGTGCCTTTATCGATGCTGAGCACGCGCTGGATCCAGTCTACGCACGTAA
ACTGGGTGTTGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCACTGGAAATCTGTGACGCACTGG
CGCGCTCTGGCGCAGTAGACGTAATCATCGTCGACTCCGTTGCAGCACTGACGCCAAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCCGTGCGTCTGGATATCCGCCGTATCGGTGCCGTGAAAGACGGTGAGAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAACAGGCTGAGTTCCAGATCATGTACGGCGA
AGGTATCAACTTCTTCGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCGAATGCAATCTCCTGGCTGAAAGAGAACCCGGCTGCAGCAAAAGAGATC
GAGAAGAAGGTGCGCGAGCTTCTGCTCAGCAACCAGGATTCCAAACCGCAGTTCGCTGTTGATGGCGAAAACGCTGAAGA
AACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Acinetobacter baylyi ADP1

70.605

98.58

0.696
  recA Pseudomonas stutzeri DSM 10701

73.353

94.886

0.696
  recA Glaesserella parasuis strain SC1401

69.828

98.864

0.69
  recA Acinetobacter baumannii D1279779

73.476

93.182

0.685
  recA Neisseria gonorrhoeae MS11

66.667

98.864

0.659
  recA Neisseria gonorrhoeae MS11

66.667

98.864

0.659
  recA Neisseria gonorrhoeae strain FA1090

66.667

98.864

0.659
  recA Ralstonia pseudosolanacearum GMI1000

67.964

94.886

0.645
  recA Streptococcus mitis SK321

60.286

99.432

0.599
  recA Streptococcus mitis NCTC 12261

60

99.432

0.597
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae R6

63.158

91.761

0.58
  recA Streptococcus pneumoniae D39

63.158

91.761

0.58
  recA Streptococcus pneumoniae TIGR4

63.158

91.761

0.58
  recA Streptococcus pneumoniae Rx1

63.158

91.761

0.58
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Lactococcus lactis subsp. cremoris KW2

62.154

92.33

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557