Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   G8B35_RS09020 Genome accession   NZ_CP049697
Coordinates   1809020..1810156 (-) Length   378 a.a.
NCBI ID   WP_002992179.1    Uniprot ID   A0A4Q1QZP2
Organism   Streptococcus pyogenes strain ABC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1800521..1828746 1809020..1810156 within 0


Gene organization within MGE regions


Location: 1800521..1828746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B35_RS08970 (G8B35_09040) nrdG 1800521..1801135 (-) 615 WP_021299115.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  G8B35_RS08975 (G8B35_09045) - 1801150..1801644 (-) 495 WP_011055085.1 GNAT family N-acetyltransferase -
  G8B35_RS08980 (G8B35_09050) - 1801653..1802588 (-) 936 WP_021299109.1 Gfo/Idh/MocA family protein -
  G8B35_RS08985 (G8B35_09055) - 1802617..1802763 (-) 147 WP_011106921.1 hypothetical protein -
  G8B35_RS08990 (G8B35_09060) nrdD 1802947..1805145 (-) 2199 WP_011529096.1 anaerobic ribonucleoside-triphosphate reductase -
  G8B35_RS08995 (G8B35_09065) - 1805242..1806801 (-) 1560 WP_011055088.1 membrane protein -
  G8B35_RS09000 (G8B35_09070) - 1807215..1807520 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  G8B35_RS09005 (G8B35_09075) ruvX 1807532..1807951 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  G8B35_RS09010 (G8B35_09080) - 1807948..1808217 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  G8B35_RS09015 (G8B35_09085) spx 1808331..1808729 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  G8B35_RS09020 (G8B35_09090) recA 1809020..1810156 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  G8B35_RS09025 (G8B35_09095) cinA 1810245..1811516 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  G8B35_RS09030 (G8B35_09100) - 1811585..1812145 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  G8B35_RS09035 (G8B35_09105) ruvA 1812155..1812751 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  G8B35_RS09040 (G8B35_09110) - 1812753..1813973 (-) 1221 WP_011529098.1 MFS transporter -
  G8B35_RS09045 (G8B35_09115) mutL 1813984..1815966 (-) 1983 WP_021299132.1 DNA mismatch repair endonuclease MutL -
  G8B35_RS09050 (G8B35_09120) - 1816061..1817206 (-) 1146 WP_021299091.1 site-specific integrase -
  G8B35_RS09055 (G8B35_09125) - 1817409..1817552 (+) 144 WP_011185066.1 putative holin-like toxin -
  G8B35_RS09060 (G8B35_09130) - 1818450..1819097 (-) 648 WP_011529101.1 helix-turn-helix transcriptional regulator -
  G8B35_RS09065 (G8B35_09135) - 1819263..1819460 (+) 198 WP_011529102.1 helix-turn-helix transcriptional regulator -
  G8B35_RS09070 (G8B35_09140) - 1819474..1820088 (+) 615 WP_021299093.1 Bro-N domain-containing protein -
  G8B35_RS09075 (G8B35_09145) - 1820115..1820357 (+) 243 WP_021299105.1 hypothetical protein -
  G8B35_RS09080 (G8B35_09150) - 1820613..1820945 (+) 333 WP_011529105.1 hypothetical protein -
  G8B35_RS09085 (G8B35_09155) - 1820942..1821163 (+) 222 WP_011529106.1 hypothetical protein -
  G8B35_RS09090 (G8B35_09160) - 1821166..1821357 (+) 192 WP_011529107.1 hypothetical protein -
  G8B35_RS09095 (G8B35_09165) - 1821369..1821731 (+) 363 WP_000206026.1 hypothetical protein -
  G8B35_RS09100 (G8B35_09170) - 1821728..1822057 (+) 330 WP_011529108.1 hypothetical protein -
  G8B35_RS09105 (G8B35_09175) - 1822060..1822332 (+) 273 WP_011529109.1 hypothetical protein -
  G8B35_RS09110 (G8B35_09180) - 1822333..1823193 (+) 861 WP_011529110.1 primase alpha helix C-terminal domain-containing protein -
  G8B35_RS09115 (G8B35_09185) - 1823268..1824707 (+) 1440 WP_042769766.1 phage/plasmid primase, P4 family -
  G8B35_RS09120 (G8B35_09190) - 1824984..1825157 (+) 174 WP_042769761.1 hypothetical protein -
  G8B35_RS09125 (G8B35_09195) - 1825163..1825336 (+) 174 WP_011529113.1 hypothetical protein -
  G8B35_RS09130 (G8B35_09200) - 1825338..1825604 (+) 267 WP_011529114.1 hypothetical protein -
  G8B35_RS09135 (G8B35_09205) - 1825611..1825769 (+) 159 WP_011529115.1 DUF2292 domain-containing protein -
  G8B35_RS09140 (G8B35_09210) - 1825870..1826472 (+) 603 WP_011529116.1 hypothetical protein -
  G8B35_RS09145 (G8B35_09215) - 1826462..1826791 (+) 330 WP_021299097.1 hypothetical protein -
  G8B35_RS09150 (G8B35_09220) - 1827067..1827333 (+) 267 WP_227868883.1 hypothetical protein -
  G8B35_RS09155 (G8B35_09225) - 1827439..1827852 (+) 414 WP_012560493.1 DUF1492 domain-containing protein -
  G8B35_RS09160 (G8B35_09230) - 1827927..1828127 (+) 201 WP_011529120.1 hypothetical protein -
  G8B35_RS09165 (G8B35_09235) - 1828194..1828388 (+) 195 Protein_1758 DUF1492 domain-containing protein -
  G8B35_RS09170 (G8B35_09240) - 1828363..1828746 (+) 384 WP_011285285.1 ArpU family phage packaging/lysis transcriptional regulator -

Sequence


Protein


Download         Length: 378 a.a.        Molecular weight: 40631.23 Da        Isoelectric Point: 4.9004

>NTDB_id=427280 G8B35_RS09020 WP_002992179.1 1809020..1810156(-) (recA) [Streptococcus pyogenes strain ABC3]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=427280 G8B35_RS09020 WP_002992179.1 1809020..1810156(-) (recA) [Streptococcus pyogenes strain ABC3]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCTCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTCGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGATCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATTTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGCTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAGGATAGCAGCATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCACAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4Q1QZP2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.735

100

0.997

  recA Streptococcus mutans UA159

87.467

100

0.886

  recA Streptococcus mitis NCTC 12261

85.34

100

0.862

  recA Streptococcus pneumoniae Rx1

84.416

100

0.86

  recA Streptococcus pneumoniae D39

84.416

100

0.86

  recA Streptococcus pneumoniae R6

84.416

100

0.86

  recA Streptococcus pneumoniae TIGR4

84.416

100

0.86

  recA Streptococcus mitis SK321

85.302

100

0.86

  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735

  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63

  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593

  recA Acinetobacter baylyi ADP1

60

92.593

0.556

  recA Acinetobacter baumannii D1279779

59.49

93.386

0.556

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553

  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545

  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545

  recA Neisseria gonorrhoeae strain FA1090

60.058

90.741

0.545

  recA Vibrio cholerae strain A1552

58.286

92.593

0.54

  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54

  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.45

0.534

  recA Pseudomonas stutzeri DSM 10701

56.897

92.063

0.524

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516

  recA Helicobacter pylori 26695

58.084

88.36

0.513

  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513

  recA Ralstonia pseudosolanacearum GMI1000

57.831

87.831

0.508