Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2750_RS07650 Genome accession   NZ_CP049682
Coordinates   1489847..1490938 (-) Length   363 a.a.
NCBI ID   WP_112205260.1    Uniprot ID   A0A2Z4JU02
Organism   Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1484847..1495938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2750_RS07620 (C2750_07625) moaC 1485153..1485632 (+) 480 WP_112314213.1 cyclic pyranopterin monophosphate synthase MoaC -
  C2750_RS07625 (C2750_07630) - 1485662..1486180 (-) 519 WP_112208528.1 pilin -
  C2750_RS07630 (C2750_07635) - 1486311..1487018 (-) 708 WP_112318457.1 TerC family protein -
  C2750_RS07635 (C2750_07640) sucD 1487049..1487942 (-) 894 WP_112208530.1 succinate--CoA ligase subunit alpha -
  C2750_RS07640 (C2750_07645) sucC 1487958..1489127 (-) 1170 WP_112205255.1 ADP-forming succinate--CoA ligase subunit beta -
  C2750_RS07645 (C2750_07650) - 1489315..1489842 (-) 528 WP_215278754.1 RecX family transcriptional regulator -
  C2750_RS07650 (C2750_07655) recA 1489847..1490938 (-) 1092 WP_112205260.1 recombinase RecA Machinery gene
  C2750_RS07655 (C2750_07660) - 1491057..1491593 (-) 537 WP_244973663.1 DUF2878 domain-containing protein -
  C2750_RS07665 (C2750_07670) - 1491756..1492373 (-) 618 WP_215271859.1 flavin reductase family protein -
  C2750_RS07670 (C2750_07675) - 1492379..1493476 (-) 1098 WP_112205318.1 choloylglycine hydrolase family protein -
  C2750_RS07675 (C2750_07680) - 1493744..1494373 (+) 630 WP_112205320.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38863.36 Da        Isoelectric Point: 4.7801

>NTDB_id=426531 C2750_RS07650 WP_112205260.1 1489847..1490938(-) (recA) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
MALDDKKKSASSEFEGMSGDKQKALSAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADLVEKSGSWYSYNGERIGQGKDN
VRDFLKENPEIAKDIEGKIREKLGVKAGTAVVADVIGEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=426531 C2750_RS07650 WP_112205260.1 1489847..1490938(-) (recA) [Polynucleobacter paneuropaeus strain AP-RePozz9-10-D2]
ATGGCCTTGGATGATAAGAAAAAATCAGCCTCTTCAGAGTTTGAAGGGATGAGCGGAGACAAGCAAAAGGCGCTATCAGC
AGCCTTAGCGCAAATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGCGATTGGGCGATGCTGAAATTAGCCAAGATATTC
AGGTGGTATCTAGCGGTTCACTGGGTTTAGACATTGCGCTCGGAGTTGGCGGTCTAGCACGCGGCCGTGTCATCGAAATC
TACGGTCCAGAATCTTCCGGTAAGACAACTTTGACCTTGCATGCGATTGCAGAAATGCAAAAGTTGGGTGGAACCTGCGC
CTTCATCGATGCGGAGCATGCGCTTGATGTGCAATACGCGTCACGTTTAGGTGTTGACGTAAACAATCTCTTGATCTCGC
AGCCTGATACTGGTGAACAAGCGTTAGAAATCGCTGACGCATTGGTACGCTCAGGTTCAATCGATCTCATTGTTATTGAC
TCTGTTGCGGCTCTAGTACCAAGAGCAGAGATTGAAGGCGATATGGGCGATTCCTTGCCAGGTTTACAAGCGCGTTTGAT
GAGTCAAGCATTACGTAAATTAACAGGCGCTATTAAGCGTACTAATACAACAGTCATTTTCATTAACCAAATTCGTATGA
AGATTGGTGTGATGTTTGGTTCTCCAGAAACTACTACTGGCGGTAACGCACTGAAGTTCTATGCATCGATGCGTTTAGAT
ATTCGCCGTATCGGTAGCATCAAAAAGGGCGACGAAGTTGTTGGTAACGAAACCCGCGTCAAGGTCGTTAAGAATAAGGT
TTCACCCCCATTCCGCGAAGCTATTTTCGACATCATGTATGGCGCTGGTATCTCTAGAGAAGGTGAGATTATCGACATGG
GCGTAGAAGCAGATCTCGTTGAAAAATCTGGATCCTGGTATAGCTACAACGGTGAGCGCATTGGTCAAGGTAAAGACAAT
GTCCGCGATTTCTTGAAAGAGAATCCAGAAATTGCTAAAGACATTGAAGGCAAAATACGTGAGAAGTTAGGTGTCAAAGC
CGGTACAGCAGTGGTAGCAGATGTGATAGGCGAAGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4JU02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.948

96.143

0.788
  recA Neisseria gonorrhoeae MS11

73.333

90.909

0.667
  recA Neisseria gonorrhoeae MS11

73.333

90.909

0.667
  recA Neisseria gonorrhoeae strain FA1090

73.333

90.909

0.667
  recA Acinetobacter baylyi ADP1

69.767

94.766

0.661
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Vibrio cholerae strain A1552

67.435

95.592

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.435

95.592

0.645
  recA Pseudomonas stutzeri DSM 10701

71.254

90.083

0.642
  recA Glaesserella parasuis strain SC1401

68.769

91.736

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

89.807

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.663

94.766

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

94.215

0.603
  recA Helicobacter pylori 26695

66.871

89.807

0.601
  recA Helicobacter pylori strain NCTC11637

66.564

89.807

0.598
  recA Streptococcus pneumoniae R6

61.012

92.562

0.565
  recA Streptococcus pneumoniae Rx1

61.012

92.562

0.565
  recA Streptococcus pneumoniae D39

61.012

92.562

0.565
  recA Streptococcus pneumoniae TIGR4

61.012

92.562

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Streptococcus pyogenes NZ131

58.721

94.766

0.556
  recA Streptococcus mitis NCTC 12261

60.909

90.909

0.554
  recA Streptococcus mitis SK321

60.606

90.909

0.551
  recA Streptococcus mutans UA159

60.303

90.909

0.548
  recA Lactococcus lactis subsp. cremoris KW2

59.394

90.909

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

88.43

0.54