Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G6R31_RS13170 Genome accession   NZ_CP049357
Coordinates   2722846..2723940 (-) Length   364 a.a.
NCBI ID   WP_017870593.1    Uniprot ID   -
Organism   Deinococcus wulumuqiensis R12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717846..2728940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS13140 (G6R31_13140) - 2717991..2718917 (+) 927 WP_025567718.1 metallophosphoesterase -
  G6R31_RS16790 - 2719118..2719558 (+) 441 WP_017870588.1 hypothetical protein -
  G6R31_RS13150 (G6R31_13150) - 2719732..2720385 (-) 654 WP_025567720.1 MarC family protein -
  G6R31_RS13155 (G6R31_13155) - 2720545..2721207 (-) 663 WP_017870590.1 hypothetical protein -
  G6R31_RS13160 (G6R31_13160) - 2721217..2721648 (-) 432 WP_017870591.1 transcriptional repressor -
  G6R31_RS13165 (G6R31_13165) - 2721721..2722653 (+) 933 WP_017870592.1 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor -
  G6R31_RS13170 (G6R31_13170) recA 2722846..2723940 (-) 1095 WP_017870593.1 recombinase RecA Machinery gene
  G6R31_RS13175 (G6R31_13175) thpR 2723937..2724650 (-) 714 WP_017870594.1 RNA 2',3'-cyclic phosphodiesterase -
  G6R31_RS13180 (G6R31_13180) - 2724647..2725873 (-) 1227 WP_017870595.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  G6R31_RS13185 (G6R31_13185) - 2726025..2726678 (+) 654 WP_017870596.1 DsbA family protein -
  G6R31_RS13190 (G6R31_13190) - 2726953..2728167 (-) 1215 WP_017870597.1 NADH:flavin oxidoreductase/NADH oxidase family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38384.03 Da        Isoelectric Point: 5.1867

>NTDB_id=426277 G6R31_RS13170 WP_017870593.1 2722846..2723940(-) (recA) [Deinococcus wulumuqiensis R12]
MSKDNPKEITAAPTDAKERLKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRVTEIYGP
ESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVIDSVA
ALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRK
IGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLSDLVGLAADMDIIKKAGSFYSYGDERIGQGKEKTI
AYIAERPEMEQEIRDRVMAAIRNGNTGEAPALAPSPAAPEAAEA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=426277 G6R31_RS13170 WP_017870593.1 2722846..2723940(-) (recA) [Deinococcus wulumuqiensis R12]
ATGAGCAAGGACAACCCGAAGGAAATCACCGCCGCCCCCACCGACGCCAAGGAGCGCCTCAAGGCCATCGAAACGGCCAT
GAGCCAGATCGAGAAGGCCTTCGGCAAAGGCTCGATCATGAAGCTGGGTGCCGAGAGCAAGCTCGACGTGCAGGTGGTCA
GCACCGGCAGCCTCAGCCTCGACCTCGCACTGGGCGTCGGCGGCATTCCGCGCGGCCGCGTCACCGAGATCTACGGCCCC
GAGTCGGGCGGCAAGACCACCCTGGCGCTCGCCATCGTCGCGCAGGCCCAGAAGGCGGGCGGCACCTGCGCCTTTATCGA
CGCCGAGCACGCCCTCGACCCGGTGTATGCCCGCGCGCTGGGGGTCAACACCGACGAACTGCTTGTCTCGCAGCCCGACA
ACGGCGAGCAGGCGCTCGAAATCATGGAACTGCTGGTGCGCTCGGGCGCGATTGACGTGGTCGTGATCGACTCGGTGGCC
GCGCTGACCCCGCGCGCCGAAATCGAGGGCGACATGGGCGACTCGCTGCCCGGCCTCCAGGCCCGGTTGATGTCGCAGGC
GCTGCGCAAGCTGACGGCGATTCTCTCCAAGACCGGCACCGCCGCCATCTTCATCAACCAGGTTCGCGAGAAAATCGGCG
TGATGTACGGCAACCCCGAAACCACCACCGGGGGCCGGGCGCTGAAGTTCTACGCCAGCGTGCGCCTCGACGTGCGTAAG
ATCGGCCAGCCCACCAAGGTCGGCAACGACGCGGTCGCCAACACCGTCAAGATCAAGACCGTGAAGAACAAAGTCGCCGC
CCCCTTCAAGGAAGTCGAACTCGCGCTGGTCTACGGCAAGGGCTTCGACCAGCTCAGCGACCTCGTGGGTCTGGCCGCCG
ACATGGACATCATCAAGAAGGCCGGCAGCTTCTACTCCTACGGCGACGAGCGCATCGGCCAGGGCAAGGAAAAGACCATC
GCCTACATCGCCGAGCGCCCCGAGATGGAGCAGGAAATCCGCGACCGCGTGATGGCCGCCATCCGCAACGGCAACACCGG
CGAAGCGCCGGCCCTGGCCCCGTCACCTGCCGCGCCCGAAGCCGCCGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

97.253

100

0.973
  recA Streptococcus pneumoniae Rx1

64.087

88.736

0.569
  recA Streptococcus pneumoniae D39

64.087

88.736

0.569
  recA Streptococcus pneumoniae R6

64.087

88.736

0.569
  recA Streptococcus pneumoniae TIGR4

64.087

88.736

0.569
  recA Streptococcus mitis NCTC 12261

63.777

88.736

0.566
  recA Streptococcus mitis SK321

63.777

88.736

0.566
  recA Glaesserella parasuis strain SC1401

63.777

88.736

0.566
  recA Acinetobacter baumannii D1279779

62.195

90.11

0.56
  recA Streptococcus pyogenes NZ131

60.778

91.758

0.558
  recA Streptococcus mutans UA159

60.479

91.758

0.555
  recA Acinetobacter baylyi ADP1

63.259

85.989

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

60.991

88.736

0.541
  recA Bacillus subtilis subsp. subtilis str. 168

59.091

90.659

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.062

88.736

0.533
  recA Vibrio cholerae strain A1552

60.062

88.736

0.533
  recA Ralstonia pseudosolanacearum GMI1000

62.338

84.615

0.527
  recA Lactococcus lactis subsp. cremoris KW2

58.896

89.56

0.527
  recA Neisseria gonorrhoeae strain FA1090

59.077

89.286

0.527
  recA Neisseria gonorrhoeae MS11

59.077

89.286

0.527
  recA Neisseria gonorrhoeae MS11

59.077

89.286

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.669

89.56

0.516
  recA Helicobacter pylori strain NCTC11637

54.07

94.505

0.511
  recA Helicobacter pylori 26695

54.07

94.505

0.511
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

55.556

91.484

0.508
  recA Pseudomonas stutzeri DSM 10701

55.12

91.209

0.503