Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SBC2_RS03075 Genome accession   NZ_CP049316
Coordinates   705999..707075 (+) Length   358 a.a.
NCBI ID   WP_165086739.1    Uniprot ID   A0A6G8NER5
Organism   Caballeronia sp. SBC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 700999..712075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS03060 (SBC2_06250) - 701545..703203 (-) 1659 WP_165086734.1 MFS transporter -
  SBC2_RS03065 (SBC2_06260) - 703431..705008 (-) 1578 WP_165086736.1 sensor histidine kinase -
  SBC2_RS03070 (SBC2_06270) - 705030..705773 (-) 744 WP_165093032.1 response regulator transcription factor -
  SBC2_RS03075 (SBC2_06280) recA 705999..707075 (+) 1077 WP_165086739.1 recombinase RecA Machinery gene
  SBC2_RS03080 (SBC2_06290) recX 707092..708729 (+) 1638 WP_241202004.1 recombination regulator RecX -
  SBC2_RS03085 (SBC2_06310) - 709300..709998 (+) 699 WP_165086742.1 DUF2889 domain-containing protein -
  SBC2_RS03090 (SBC2_06320) sucC 710201..711382 (+) 1182 WP_326972956.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38184.82 Da        Isoelectric Point: 4.8224

>NTDB_id=426046 SBC2_RS03075 WP_165086739.1 705999..707075(+) (recA) [Caballeronia sp. SBC2]
MEDSKKGPGGMSAEKSKALAVALAQIEKQFGKGSIMRLGAGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLALQVIAEMQKVGGTAAFIDAEHALDIAYAQKLGVSPSDLLISQPDTGEQALEICDALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVAPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGERIGQGKDNAREFLR
ENPEMAREIENKIRESLGVNAMADAVAPGVAEVADEEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=426046 SBC2_RS03075 WP_165086739.1 705999..707075(+) (recA) [Caballeronia sp. SBC2]
ATGGAAGATAGCAAGAAAGGCCCGGGCGGGATGTCTGCAGAGAAGAGCAAGGCGCTTGCCGTCGCGCTCGCGCAGATCGA
GAAGCAATTCGGCAAGGGGTCGATCATGCGACTCGGCGCTGGCGAAGCCATTGAAGACATTCAAGTGGTGTCAACCGGCT
CGCTCGGACTGGATATTGCGTTGGGCGTTGGCGGCTTGCCGCGTGGACGCGTAGTGGAAATCTACGGTCCGGAATCGTCG
GGCAAGACCACGCTGGCGCTGCAAGTGATTGCGGAGATGCAGAAGGTCGGTGGCACGGCGGCATTTATCGACGCGGAACA
CGCGCTCGACATCGCTTACGCGCAAAAGCTTGGCGTGAGTCCGTCAGACCTGCTGATCTCGCAGCCGGACACGGGTGAGC
AAGCGCTGGAAATCTGCGATGCGCTCGTGCGCTCGGGTTCCATCGACATGATCGTGATCGACTCGGTCGCGGCACTGGTG
CCAAAGGCTGAAATTGAAGGCGAAATGGGCGACTCGTTGCCTGGTTTGCAGGCACGTTTGATGTCGCAGGCGCTGCGCAA
GCTGACCGGCACGATCAAGCGTACGAACTGCTTGGTGATCTTCATTAACCAGATCCGCATGAAGATTGGCGTGATGTTCG
GCAATCCGGAAACCACCACGGGTGGTAACGCGTTGAAGTTCTACGCATCGGTGCGTCTGGACATTCGTCGTATCGGTTCG
ATCAAGAAGAACGACGAAGTGATCGGCAACGAAACACGCGTGAAGGTGGTGAAGAACAAGGTTGCGCCGCCGTTCCGTGA
AGCCATCTTTGACATCTTGTACGGCGAAGGTATTTCGCGTCAGGGCGAAATCATTGACCTGGGCGTGCAGGCCAAGCTGG
TCGACAAGGCAGGCGCCTGGTACAGCTATAACGGCGAACGGATTGGTCAGGGTAAGGACAACGCACGCGAATTCCTGCGT
GAGAATCCTGAAATGGCGCGTGAAATCGAAAACAAGATTCGCGAGTCGCTGGGCGTCAATGCAATGGCCGACGCAGTCGC
ACCGGGTGTTGCCGAAGTGGCGGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8NER5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.673

95.531

0.818
  recA Neisseria gonorrhoeae MS11

74.164

91.899

0.682
  recA Neisseria gonorrhoeae strain FA1090

74.164

91.899

0.682
  recA Neisseria gonorrhoeae MS11

74.164

91.899

0.682
  recA Pseudomonas stutzeri DSM 10701

70.029

96.927

0.679
  recA Glaesserella parasuis strain SC1401

69.164

96.927

0.67
  recA Acinetobacter baumannii D1279779

68.678

97.207

0.668
  recA Acinetobacter baylyi ADP1

72.477

91.341

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.56

91.341

0.654
  recA Vibrio cholerae strain A1552

71.56

91.341

0.654
  recA Bacillus subtilis subsp. subtilis str. 168

65.244

91.62

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.742

91.899

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.664

93.017

0.592
  recA Helicobacter pylori 26695

64.634

91.62

0.592
  recA Helicobacter pylori strain NCTC11637

64.329

91.62

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

61.012

93.855

0.573
  recA Streptococcus mutans UA159

61.515

92.179

0.567
  recA Streptococcus mitis NCTC 12261

61.027

92.458

0.564
  recA Streptococcus mitis SK321

61.027

92.458

0.564
  recA Streptococcus pneumoniae TIGR4

60.725

92.458

0.561
  recA Streptococcus pneumoniae Rx1

60.725

92.458

0.561
  recA Streptococcus pneumoniae D39

60.725

92.458

0.561
  recA Streptococcus pneumoniae R6

60.725

92.458

0.561
  recA Lactococcus lactis subsp. cremoris KW2

60.36

93.017

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

89.665

0.559
  recA Streptococcus pyogenes NZ131

60.486

91.899

0.556