Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CVT17_RS08275 Genome accession   NZ_CP049272
Coordinates   1654857..1655954 (+) Length   365 a.a.
NCBI ID   WP_087577896.1    Uniprot ID   -
Organism   Campylobacter concisus strain P27CDO-S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649857..1660954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT17_RS08240 (CVT17_08250) modA 1649892..1650590 (-) 699 WP_107858947.1 molybdate ABC transporter substrate-binding protein -
  CVT17_RS08245 (CVT17_08255) - 1650715..1651803 (+) 1089 WP_107770569.1 nicotinate phosphoribosyltransferase -
  CVT17_RS08250 (CVT17_08260) - 1651812..1652309 (+) 498 WP_107770568.1 chemotaxis protein -
  CVT17_RS08255 (CVT17_08265) - 1652365..1653237 (+) 873 WP_107770567.1 menaquinone biosynthesis family protein -
  CVT17_RS08260 (CVT17_08270) fliQ 1653234..1653503 (+) 270 WP_223154533.1 flagellar biosynthesis protein FliQ -
  CVT17_RS08265 (CVT17_08275) - 1653500..1654297 (+) 798 WP_087577894.1 UDP-N-acetylmuramate dehydrogenase -
  CVT17_RS08270 (CVT17_08280) - 1654306..1654794 (+) 489 WP_107858946.1 addiction module antitoxin -
  CVT17_RS08275 (CVT17_08285) recA 1654857..1655954 (+) 1098 WP_087577896.1 recombinase RecA Machinery gene
  CVT17_RS08280 (CVT17_08290) eno 1655954..1657204 (+) 1251 WP_107858945.1 phosphopyruvate hydratase -
  CVT17_RS09465 - 1657309..1657491 (+) 183 WP_180378667.1 hypothetical protein -
  CVT17_RS08290 (CVT17_08300) - 1657497..1658357 (+) 861 WP_107858944.1 AMIN domain-containing protein -
  CVT17_RS08295 (CVT17_08305) - 1658434..1659495 (+) 1062 WP_107775523.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39209.83 Da        Isoelectric Point: 5.0163

>NTDB_id=425810 CVT17_RS08275 WP_087577896.1 1654857..1655954(+) (recA) [Campylobacter concisus strain P27CDO-S2]
MAKEKDSDKKIAIPESEADKKKALELALKQIDKAFGKGTLLRLGDKEVEAIESIPTGSLGLDLALGIGGVPKGRIVEIYG
PESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFGEQALEIVETLARSGAIDLIVVDSV
AALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNDEPIGNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPEISDEIVAAIKGSMGIDHLISSGAKDEDDDTNEAGDE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=425810 CVT17_RS08275 WP_087577896.1 1654857..1655954(+) (recA) [Campylobacter concisus strain P27CDO-S2]
ATGGCAAAAGAAAAAGATAGTGACAAAAAGATAGCTATCCCAGAGAGCGAAGCGGACAAGAAAAAGGCGCTCGAGCTTGC
GCTAAAGCAGATCGATAAAGCTTTTGGTAAAGGCACGCTTTTAAGGCTTGGCGATAAAGAGGTTGAGGCGATCGAGTCGA
TACCGACTGGCTCGCTAGGACTTGACCTGGCTCTTGGCATAGGCGGCGTTCCAAAAGGCAGGATCGTTGAGATCTATGGA
CCAGAAAGCTCTGGTAAGACCACGCTCACACTTCACATCATCGCTGAAGCGCAAAAAGCTGGCGGAATTTGTGCATTTGT
CGATGCAGAGCACGCACTAGACGTAAAATACGCTTCAAATTTAGGTGTAAATACCGACAACCTCTACGTCTCTCAGCCTG
ACTTTGGCGAGCAGGCACTTGAGATCGTTGAGACACTTGCAAGAAGCGGTGCGATCGATCTTATCGTAGTTGATAGCGTC
GCAGCTCTTACTCCAAAGAGCGAGATAGACGGCGATATGGGCGATCAGCACGTTGGCCTGCAAGCAAGACTAATGAGTCA
GGCACTTAGAAAGCTAACTGGAATTTTAAGTAAGATGAAGACAACTGTTATCTTCATCAACCAAATTCGTATGAAGATCG
GTATGATGGGATATGGCACGCCAGAGACCACGACTGGCGGTAACGCGCTTAAATTTTACTCATCTGTAAGAATAGACGTT
AGAAAGATAGCCACACTTAAACAAAACGACGAGCCTATCGGCAACCGCACAAAAGCAAAAGTCGTTAAAAACAAGGTCGC
GCCTCCATTTAAAGTGGCTGAATTTGACATCATGTTTGGCGAGGGTGTGAGCAAAGAGGGCGAGATCATCGACTATGGCG
TAAAGCTCGACATTATCGACAAATCAGGCGCGTGGTTTAGCTACAAGGCCGAAAAACTAGGTCAAGGTAGAGAAAACGCC
AAAGCCTATCTAAAAGAGCACCCAGAAATTTCTGATGAGATAGTAGCGGCGATCAAAGGCTCAATGGGGATCGATCACCT
AATAAGCAGCGGCGCAAAAGACGAAGACGACGACACAAACGAAGCAGGAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.353

93.151

0.767
  recA Helicobacter pylori 26695

80.308

89.041

0.715
  recA Helicobacter pylori strain NCTC11637

80

89.041

0.712
  recA Neisseria gonorrhoeae MS11

65.588

93.151

0.611
  recA Neisseria gonorrhoeae MS11

65.588

93.151

0.611
  recA Neisseria gonorrhoeae strain FA1090

65.588

93.151

0.611
  recA Glaesserella parasuis strain SC1401

60.218

100

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.584

89.589

0.605
  recA Acinetobacter baylyi ADP1

63.529

93.151

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.742

90.137

0.584
  recA Pseudomonas stutzeri DSM 10701

65.123

88.767

0.578
  recA Acinetobacter baumannii D1279779

62.763

91.233

0.573
  recA Vibrio cholerae strain A1552

64.856

85.753

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.856

85.753

0.556
  recA Streptococcus pneumoniae Rx1

61.329

90.685

0.556
  recA Streptococcus pneumoniae TIGR4

61.329

90.685

0.556
  recA Streptococcus pneumoniae R6

61.329

90.685

0.556
  recA Streptococcus pneumoniae D39

61.329

90.685

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.412

93.151

0.553
  recA Streptococcus mitis NCTC 12261

61.027

90.685

0.553
  recA Streptococcus pyogenes NZ131

61.094

90.137

0.551
  recA Streptococcus mitis SK321

60.423

90.685

0.548
  recA Lactococcus lactis subsp. cremoris KW2

60.423

90.685

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.309

93.973

0.548
  recA Ralstonia pseudosolanacearum GMI1000

63.091

86.849

0.548
  recA Streptococcus mutans UA159

60.303

90.411

0.545