Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CVT07_RS08720 Genome accession   NZ_CP049264
Coordinates   1756311..1757408 (+) Length   365 a.a.
NCBI ID   WP_107936503.1    Uniprot ID   -
Organism   Campylobacter concisus strain P11CDO-S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751311..1762408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT07_RS08685 (CVT07_08685) modA 1751343..1752041 (-) 699 WP_107936515.1 molybdate ABC transporter substrate-binding protein -
  CVT07_RS08690 (CVT07_08690) - 1752169..1753257 (+) 1089 WP_107936513.1 nicotinate phosphoribosyltransferase -
  CVT07_RS08695 (CVT07_08695) - 1753266..1753763 (+) 498 WP_107936511.1 chemotaxis protein -
  CVT07_RS08700 (CVT07_08700) - 1753819..1754691 (+) 873 WP_107936509.1 MqnA/MqnD/SBP family protein -
  CVT07_RS08705 (CVT07_08705) fliQ 1754688..1754957 (+) 270 WP_228027488.1 flagellar biosynthesis protein FliQ -
  CVT07_RS08710 (CVT07_08710) - 1754954..1755751 (+) 798 WP_107936507.1 UDP-N-acetylmuramate dehydrogenase -
  CVT07_RS08715 (CVT07_08715) - 1755760..1756248 (+) 489 WP_107936505.1 addiction module antitoxin -
  CVT07_RS08720 (CVT07_08720) recA 1756311..1757408 (+) 1098 WP_107936503.1 recombinase RecA Machinery gene
  CVT07_RS08725 (CVT07_08725) eno 1757408..1758658 (+) 1251 WP_002940828.1 phosphopyruvate hydratase -
  CVT07_RS10305 - 1758763..1758945 (+) 183 WP_178140078.1 hypothetical protein -
  CVT07_RS08735 (CVT07_08735) - 1758951..1759811 (+) 861 WP_107936501.1 AMIN domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39237.88 Da        Isoelectric Point: 5.0163

>NTDB_id=425777 CVT07_RS08720 WP_107936503.1 1756311..1757408(+) (recA) [Campylobacter concisus strain P11CDO-S1]
MAKEKDSDKKIAIPESEADKKKALELALKQIDKAFGKGTLLRLGDKEVEAIESIPTGSLGLDLALGIGGIPKGRIIEIYG
PESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFGEQALEIVETLARSGAIDLIVVDSV
AALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNDEPIGNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPEISDEIVAAIKGSMGIDHLISSGAKDEDDDTNEAGDE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=425777 CVT07_RS08720 WP_107936503.1 1756311..1757408(+) (recA) [Campylobacter concisus strain P11CDO-S1]
ATGGCAAAAGAAAAAGATAGTGACAAAAAGATAGCTATCCCAGAGAGCGAAGCGGACAAGAAAAAGGCGCTCGAGCTTGC
GCTAAAGCAGATCGATAAAGCTTTTGGCAAAGGCACGCTTTTAAGACTTGGCGACAAAGAGGTTGAGGCTATCGAGTCGA
TACCGACTGGCTCGCTAGGGCTTGATCTGGCTCTTGGCATAGGCGGCATCCCAAAAGGCAGGATCATCGAGATATACGGA
CCAGAGAGCTCTGGTAAGACCACGCTCACACTTCACATCATCGCTGAAGCGCAAAAAGCTGGCGGAATTTGTGCATTTGT
CGATGCAGAGCACGCGCTAGACGTAAAATACGCCTCAAATTTAGGTGTAAATACCGACAATCTTTACGTCTCTCAGCCAG
ACTTTGGCGAGCAGGCACTTGAGATCGTTGAGACACTTGCAAGAAGCGGTGCGATCGATCTTATCGTAGTTGATAGCGTC
GCAGCTCTTACTCCAAAGAGCGAGATAGACGGCGATATGGGCGATCAACACGTTGGTCTGCAAGCAAGACTAATGAGCCA
GGCGCTTAGAAAGCTAACTGGAATTTTAAGCAAGATGAAGACGACTGTTATCTTCATCAACCAAATTCGTATGAAGATCG
GCATGATGGGATATGGCACGCCAGAGACCACAACTGGCGGTAATGCACTTAAATTTTACTCATCTGTAAGAATAGACGTT
AGAAAGATAGCCACACTTAAACAAAATGACGAGCCTATCGGCAACCGCACAAAGGCAAAAGTCGTAAAAAACAAGGTCGC
GCCTCCATTTAAAGTGGCTGAATTTGACATCATGTTTGGCGAGGGTGTGAGCAAAGAGGGCGAGATCATCGACTATGGCG
TAAAGCTCGACATCATCGACAAATCAGGCGCGTGGTTTAGCTACAAGGCCGAAAAACTAGGTCAAGGCAGAGAAAACGCC
AAAGCCTACCTAAAAGAGCACCCAGAAATTTCTGACGAGATAGTAGCGGCGATAAAAGGCTCAATGGGGATAGACCACCT
AATAAGCAGCGGCGCAAAAGACGAAGACGACGACACAAACGAAGCAGGAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.353

93.151

0.767
  recA Helicobacter pylori 26695

80.308

89.041

0.715
  recA Helicobacter pylori strain NCTC11637

80

89.041

0.712
  recA Neisseria gonorrhoeae MS11

65.294

93.151

0.608
  recA Neisseria gonorrhoeae MS11

65.294

93.151

0.608
  recA Neisseria gonorrhoeae strain FA1090

65.294

93.151

0.608
  recA Glaesserella parasuis strain SC1401

59.946

100

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.278

89.589

0.603
  recA Acinetobacter baylyi ADP1

63.235

93.151

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

90.137

0.586
  recA Pseudomonas stutzeri DSM 10701

64.815

88.767

0.575
  recA Acinetobacter baumannii D1279779

63.063

91.233

0.575
  recA Streptococcus pneumoniae D39

61.631

90.685

0.559
  recA Streptococcus pneumoniae TIGR4

61.631

90.685

0.559
  recA Streptococcus pneumoniae R6

61.631

90.685

0.559
  recA Streptococcus pneumoniae Rx1

61.631

90.685

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.706

93.151

0.556
  recA Streptococcus mitis NCTC 12261

61.329

90.685

0.556
  recA Vibrio cholerae strain A1552

64.537

85.753

0.553
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.537

85.753

0.553
  recA Streptococcus pyogenes NZ131

61.398

90.137

0.553
  recA Streptococcus mitis SK321

60.725

90.685

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60.121

90.685

0.545
  recA Ralstonia pseudosolanacearum GMI1000

62.776

86.849

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

58.017

93.973

0.545
  recA Streptococcus mutans UA159

60

90.411

0.542