Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G6N82_RS14435 Genome accession   NZ_CP049259
Coordinates   2960150..2961214 (+) Length   354 a.a.
NCBI ID   WP_165197629.1    Uniprot ID   -
Organism   Altererythrobacter sp. BO-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2955150..2966214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6N82_RS14425 (G6N82_14425) - 2956896..2958392 (+) 1497 WP_241255128.1 DUF4139 domain-containing protein -
  G6N82_RS14430 (G6N82_14430) - 2958397..2959995 (+) 1599 WP_165197627.1 hypothetical protein -
  G6N82_RS14435 (G6N82_14435) recA 2960150..2961214 (+) 1065 WP_165197629.1 recombinase RecA Machinery gene
  G6N82_RS14440 (G6N82_14440) - 2961390..2962226 (+) 837 WP_165197631.1 class I SAM-dependent methyltransferase -
  G6N82_RS14445 (G6N82_14445) alaS 2962277..2964943 (+) 2667 WP_165197633.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38118.53 Da        Isoelectric Point: 5.0685

>NTDB_id=425758 G6N82_RS14435 WP_165197629.1 2960150..2961214(+) (recA) [Altererythrobacter sp. BO-6]
MATSLKLVEKESSVDRQKALEAALAQIDRAFGKGSAMKLGSKETMQVESISTGSLGLDIALGIGGLPKGRVIEVYGPESS
GKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALV
PRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQ
IKDRDDIVGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGSWFSYDSIRIGQGRENAKQYLK
DNPEICDKLEAAIRSQTDKVAEEMMTGPDADSDD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=425758 G6N82_RS14435 WP_165197629.1 2960150..2961214(+) (recA) [Altererythrobacter sp. BO-6]
ATGGCGACGAGTCTGAAACTGGTTGAAAAGGAGTCATCCGTGGATCGTCAGAAGGCGCTCGAAGCCGCTTTGGCCCAGAT
TGACCGGGCCTTTGGCAAAGGCTCGGCGATGAAGCTCGGTTCGAAGGAAACGATGCAGGTCGAATCGATTTCGACCGGCT
CGCTCGGCCTCGATATCGCGCTTGGTATCGGCGGATTGCCCAAGGGGCGCGTGATCGAGGTGTATGGTCCGGAAAGCTCG
GGCAAGACCACGCTGGCGCTGCATGTGATTGCCGAAGCGCAGAAGAATGGCGGCACGGCGGCTTTCGTCGATGCCGAACA
TGCGCTGGACCCGGTCTATGCCAAGAAGCTCGGCGTCGATATCGACGAGTTGATCGTGTCGCAGCCCGACACGGGCGAGC
AGGCGCTGGAAATCACCGATACGCTGGTGCGTTCGAATGCGATCGATGTGCTGGTGGTGGACTCGGTCGCGGCGCTGGTG
CCGCGCGCGGAGATCGAAGGCGAGATGGGTGACAGCCATGTCGGCCTGCAGGCCCGCCTGATGTCGCAATCGCTGCGCAA
GCTGACGGGTTCGATCAACCGTTCGAAGTGCATGGTGATTTTCATCAACCAGCTGCGCATGAAGATCGGGGTGATGTACG
GCAATCCGGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTTCGGCTCGACATTCGCCGCACCGGCCAG
ATCAAGGATCGTGACGATATCGTTGGCAACACCACTCGCGTGAAAGTGGTGAAGAACAAGGTCGCGCCACCGTTCAAGCA
GGTCGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGATCGGCGAGATCCTGGACCTGGGCGTCAAGGCAGGGCTGG
TCGAGAAATCCGGCAGCTGGTTCTCCTATGACAGCATCCGGATCGGCCAGGGCCGCGAAAATGCCAAGCAGTACCTCAAG
GACAACCCAGAGATTTGCGACAAGTTGGAAGCTGCCATCCGCAGCCAGACCGACAAGGTCGCCGAGGAGATGATGACGGG
CCCGGACGCGGATTCCGACGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

66.477

99.435

0.661
  recA Pseudomonas stutzeri DSM 10701

70.807

90.96

0.644
  recA Vibrio cholerae strain A1552

67.463

94.633

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.463

94.633

0.638
  recA Neisseria gonorrhoeae MS11

68.827

91.525

0.63
  recA Neisseria gonorrhoeae MS11

68.827

91.525

0.63
  recA Neisseria gonorrhoeae strain FA1090

68.827

91.525

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.323

90.96

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

92.655

0.613
  recA Acinetobacter baylyi ADP1

67.391

90.96

0.613
  recA Acinetobacter baumannii D1279779

67.391

90.96

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

95.48

0.61
  recA Helicobacter pylori 26695

63.69

94.915

0.605
  recA Helicobacter pylori strain NCTC11637

63.393

94.915

0.602
  recA Ralstonia pseudosolanacearum GMI1000

68.065

87.571

0.596
  recA Streptococcus mitis NCTC 12261

62.202

94.915

0.59
  recA Streptococcus pyogenes NZ131

60.704

96.328

0.585
  recA Streptococcus mitis SK321

61.607

94.915

0.585
  recA Streptococcus pneumoniae R6

61.31

94.915

0.582
  recA Streptococcus pneumoniae TIGR4

61.31

94.915

0.582
  recA Streptococcus pneumoniae Rx1

61.31

94.915

0.582
  recA Streptococcus pneumoniae D39

61.31

94.915

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

64.174

90.678

0.582
  recA Streptococcus mutans UA159

58.571

98.87

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

92.09

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.457

95.198

0.556