Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G6N79_RS06155 Genome accession   NZ_CP049246
Coordinates   1398208..1399233 (-) Length   341 a.a.
NCBI ID   WP_103906795.1    Uniprot ID   A0A1H6AFR7
Organism   Sphingobacterium lactis strain DSM 22361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393208..1404233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6N79_RS06140 - 1395322..1395750 (-) 429 WP_146060637.1 hypothetical protein -
  G6N79_RS06145 - 1395934..1397415 (+) 1482 WP_146060638.1 DUF5687 family protein -
  G6N79_RS06150 - 1397434..1398132 (+) 699 WP_103906794.1 ABC transporter ATP-binding protein -
  G6N79_RS06155 recA 1398208..1399233 (-) 1026 WP_103906795.1 recombinase RecA Machinery gene
  G6N79_RS06160 nth 1399401..1400036 (-) 636 WP_103906796.1 endonuclease III -
  G6N79_RS06165 - 1400264..1400467 (+) 204 WP_103906797.1 hypothetical protein -
  G6N79_RS06170 - 1400734..1401150 (+) 417 WP_103906798.1 hypothetical protein -
  G6N79_RS06175 - 1401154..1401534 (-) 381 WP_103906799.1 hypothetical protein -
  G6N79_RS06180 - 1401980..1403605 (-) 1626 WP_103906801.1 S8 family peptidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36675.13 Da        Isoelectric Point: 4.8818

>NTDB_id=425707 G6N79_RS06155 WP_103906795.1 1398208..1399233(-) (recA) [Sphingobacterium lactis strain DSM 22361]
MSNSDKLKALQLTLDKLEKSYGKGTIMKLGDSAVEPIEAISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKKGGIAAIIDAEHAFDKYYAQKLGVDVENLLISQPDNGEQALEIADNLIRSGAIDVIVIDSVAALVPKGEIEGEMG
ESKMGLQARLMSQALRKLTGTIAKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYGIVKKSGSWFSYGDTKLGQGRDAVKALLLDNPDLMDELE
TKIRAEVTGQDLDQAAIKEEE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=425707 G6N79_RS06155 WP_103906795.1 1398208..1399233(-) (recA) [Sphingobacterium lactis strain DSM 22361]
ATGAGCAACTCAGACAAATTAAAAGCGTTACAGCTTACTTTAGATAAATTAGAAAAGAGCTACGGTAAAGGAACCATCAT
GAAGCTAGGTGATTCAGCTGTTGAACCTATCGAAGCGATTTCTACGGGTTCATTGGGTTTGGATATTGCGTTGGGAATTG
GCGGGGTGCCTAAAGGCCGTATTATTGAGATTTATGGTCCTGAATCCTCAGGTAAAACAACCTTAGCGACGCATATCGTT
GCTGAAGCTCAGAAAAAAGGTGGTATTGCTGCCATTATCGATGCGGAGCATGCCTTTGATAAATATTATGCCCAGAAATT
AGGCGTAGATGTGGAGAACCTACTGATCTCCCAACCGGACAACGGTGAGCAAGCTCTTGAGATTGCCGACAACTTGATTC
GCTCCGGTGCGATTGATGTCATCGTGATCGACTCGGTGGCTGCATTGGTGCCTAAAGGCGAGATCGAAGGCGAAATGGGT
GAATCCAAAATGGGTCTTCAGGCGCGCTTAATGTCCCAGGCCTTGCGTAAATTGACAGGTACCATCGCAAAAACAAACTG
TTGTTGTATCTTCATCAACCAATTGCGCGAGAAAATTGGGGTGATGTTCGGTAATCCAGAAACAACAACCGGTGGTAATG
CGCTGAAATTCTATGCTTCCGTACGTTTGGATATCCGCCGTACCTCCCAGATCAAAGACTCAGACGAGGTATCTGGTAAC
CGCGTAAAAGTGAAAATCGTGAAGAACAAAGTAGCTCCTCCATTCCGCATCGCTGAATTTGACATTATGTTTGGTGAAGG
TATTTCCAAAGTAGGTGAAATCATTGACCTAGGGGTTGAGTACGGGATTGTTAAGAAATCCGGATCTTGGTTCAGCTACG
GAGACACCAAACTCGGTCAGGGTCGTGATGCCGTAAAAGCACTCTTGTTGGATAATCCGGACTTAATGGACGAATTGGAA
ACCAAGATCAGAGCAGAAGTAACAGGTCAGGATTTGGATCAAGCTGCTATCAAAGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H6AFR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.256

96.188

0.695
  recA Ralstonia pseudosolanacearum GMI1000

66.975

95.015

0.636
  recA Helicobacter pylori strain NCTC11637

65.951

95.601

0.63
  recA Neisseria gonorrhoeae MS11

66.358

95.015

0.63
  recA Neisseria gonorrhoeae MS11

66.358

95.015

0.63
  recA Neisseria gonorrhoeae strain FA1090

66.358

95.015

0.63
  recA Helicobacter pylori 26695

65.644

95.601

0.628
  recA Acinetobacter baylyi ADP1

63.018

99.12

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.635

94.721

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

65.109

94.135

0.613
  recA Glaesserella parasuis strain SC1401

65.517

93.548

0.613
  recA Acinetobacter baumannii D1279779

64

95.308

0.61
  recA Pseudomonas stutzeri DSM 10701

63.692

95.308

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

94.428

0.587
  recA Vibrio cholerae strain A1552

62.112

94.428

0.587
  recA Streptococcus pneumoniae Rx1

58.187

100

0.584
  recA Streptococcus pneumoniae TIGR4

58.187

100

0.584
  recA Streptococcus pneumoniae D39

58.187

100

0.584
  recA Streptococcus pneumoniae R6

58.187

100

0.584
  recA Streptococcus mitis SK321

58.754

98.827

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.429

95.601

0.578
  recA Streptococcus mitis NCTC 12261

59.939

95.894

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

60

95.308

0.572
  recA Streptococcus pyogenes NZ131

60.185

95.015

0.572
  recA Streptococcus mutans UA159

57.975

95.601

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

95.015

0.537