Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G5B95_RS08160 Genome accession   NZ_CP049237
Coordinates   1614513..1615610 (+) Length   365 a.a.
NCBI ID   WP_021085361.1    Uniprot ID   A0A0M4TCP9
Organism   Campylobacter concisus strain H1O1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1609513..1620610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B95_RS08125 (G5B95_08135) modA 1609543..1610241 (-) 699 WP_107898227.1 molybdate ABC transporter substrate-binding protein -
  G5B95_RS08130 (G5B95_08140) - 1610371..1611459 (+) 1089 WP_103577316.1 nicotinate phosphoribosyltransferase -
  G5B95_RS08135 (G5B95_08145) - 1611468..1611965 (+) 498 WP_103577317.1 chemotaxis protein -
  G5B95_RS08140 (G5B95_08150) - 1612021..1612893 (+) 873 WP_103577318.1 menaquinone biosynthesis family protein -
  G5B95_RS08145 (G5B95_08155) fliQ 1612890..1613159 (+) 270 WP_223154231.1 flagellar biosynthesis protein FliQ -
  G5B95_RS08150 (G5B95_08160) - 1613156..1613953 (+) 798 WP_196087928.1 UDP-N-acetylmuramate dehydrogenase -
  G5B95_RS08155 (G5B95_08165) - 1613962..1614450 (+) 489 WP_196087930.1 hypothetical protein -
  G5B95_RS08160 (G5B95_08170) recA 1614513..1615610 (+) 1098 WP_021085361.1 recombinase RecA Machinery gene
  G5B95_RS08165 (G5B95_08175) eno 1615610..1616860 (+) 1251 WP_103577321.1 phosphopyruvate hydratase -
  G5B95_RS09950 - 1616965..1617147 (+) 183 WP_180378667.1 hypothetical protein -
  G5B95_RS08175 (G5B95_08185) - 1617153..1618013 (+) 861 WP_103577323.1 AMIN domain-containing protein -
  G5B95_RS08180 (G5B95_08190) - 1618090..1619154 (+) 1065 WP_103577324.1 tyrosine-type recombinase/integrase -
  G5B95_RS08185 (G5B95_08195) - 1619473..1620606 (-) 1134 WP_103577325.1 glycerate kinase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39209.83 Da        Isoelectric Point: 5.0163

>NTDB_id=425627 G5B95_RS08160 WP_021085361.1 1614513..1615610(+) (recA) [Campylobacter concisus strain H1O1]
MAKEKDSDKKIAIPESEADKKKALELALKQIDKAFGKGTLLRLGDKEVEAIESIPTGSLGLDLALGIGGVPKGRIIEIYG
PESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFGEQALEIVETLARSGAVDLIVVDSV
AALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNDEPIGNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPEISDEIVAAIKGSMGIDHLISSGAKDEDDDTNEAGDE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=425627 G5B95_RS08160 WP_021085361.1 1614513..1615610(+) (recA) [Campylobacter concisus strain H1O1]
ATGGCAAAAGAAAAAGATAGTGACAAAAAGATAGCTATCCCAGAGAGTGAAGCGGACAAGAAAAAGGCGCTTGAGCTTGC
ACTAAAGCAGATCGATAAAGCTTTTGGTAAAGGCACGCTTTTAAGGCTTGGCGACAAAGAGGTCGAGGCGATCGAGTCGA
TACCTACTGGCTCGCTAGGGCTTGACCTAGCTCTTGGCATAGGTGGCGTTCCAAAAGGCAGGATTATCGAGATCTACGGA
CCAGAGAGCTCTGGTAAGACCACACTCACACTTCACATTATCGCTGAAGCGCAAAAAGCTGGCGGAATTTGTGCGTTTGT
TGATGCAGAGCATGCACTAGATGTAAAATACGCTTCAAATTTAGGCGTAAATACTGACAATCTTTACGTTTCTCAACCAG
ACTTTGGCGAGCAGGCACTTGAGATCGTTGAAACACTTGCTAGAAGCGGTGCGGTCGATCTTATCGTAGTTGATAGCGTT
GCTGCACTTACTCCAAAGAGCGAGATAGATGGCGACATGGGCGATCAGCACGTGGGCCTGCAAGCAAGGCTTATGAGCCA
GGCGCTTAGAAAGCTAACCGGAATTTTAAGCAAGATGAAGACAACCGTCATCTTCATCAACCAAATTCGTATGAAGATCG
GCATGATGGGATATGGCACGCCAGAGACCACAACTGGCGGTAATGCACTTAAATTTTACTCATCTGTAAGAATAGACGTA
AGAAAGATAGCCACACTTAAACAAAACGACGAGCCTATCGGCAACCGCACAAAGGCAAAAGTCGTTAAAAACAAGGTGGC
TCCTCCATTTAAAGTGGCTGAATTTGACATCATGTTTGGCGAGGGTGTTAGCAAAGAGGGCGAGATCATCGACTATGGCG
TAAAGCTCGACATTATCGACAAATCAGGCGCATGGTTTAGCTACAAGGCCGAAAAACTAGGTCAAGGCAGAGAAAATGCC
AAAGCCTACCTAAAAGAGCACCCAGAAATTTCTGACGAAATAGTAGCGGCGATAAAAGGTTCAATGGGGATCGATCACCT
AATAAGCAGCGGCGCAAAAGACGAAGACGACGACACAAACGAAGCAGGAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4TCP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.941

93.151

0.773
  recA Helicobacter pylori 26695

80.308

89.041

0.715
  recA Helicobacter pylori strain NCTC11637

80

89.041

0.712
  recA Glaesserella parasuis strain SC1401

60.218

100

0.605
  recA Neisseria gonorrhoeae MS11

65

93.151

0.605
  recA Neisseria gonorrhoeae strain FA1090

65

93.151

0.605
  recA Neisseria gonorrhoeae MS11

65

93.151

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.584

89.589

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

90.137

0.589
  recA Acinetobacter baylyi ADP1

62.941

93.151

0.586
  recA Pseudomonas stutzeri DSM 10701

65.123

88.767

0.578
  recA Acinetobacter baumannii D1279779

62.763

91.233

0.573
  recA Streptococcus pneumoniae TIGR4

61.934

90.685

0.562
  recA Streptococcus pneumoniae Rx1

61.934

90.685

0.562
  recA Streptococcus pneumoniae D39

61.934

90.685

0.562
  recA Streptococcus pneumoniae R6

61.934

90.685

0.562
  recA Streptococcus mitis NCTC 12261

61.631

90.685

0.559
  recA Streptococcus pyogenes NZ131

61.702

90.137

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.856

85.753

0.556
  recA Vibrio cholerae strain A1552

64.856

85.753

0.556
  recA Streptococcus mitis SK321

61.027

90.685

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.118

93.151

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60.423

90.685

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

58.309

93.973

0.548
  recA Ralstonia pseudosolanacearum GMI1000

63.091

86.849

0.548
  recA Streptococcus mutans UA159

60.303

90.411

0.545