Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G6Z84_RS05550 Genome accession   NZ_CP049226
Coordinates   1127629..1128666 (-) Length   345 a.a.
NCBI ID   WP_164825056.1    Uniprot ID   -
Organism   Lactobacillus iners strain C0011D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122629..1133666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z84_RS05530 (G6Z84_05530) - 1122640..1123929 (-) 1290 WP_164825054.1 helicase-related protein -
  G6Z84_RS05535 (G6Z84_05535) - 1123971..1124636 (+) 666 WP_006736074.1 YigZ family protein -
  G6Z84_RS05540 (G6Z84_05540) - 1124683..1125819 (-) 1137 WP_164825055.1 MraY family glycosyltransferase -
  G6Z84_RS05545 (G6Z84_05545) rny 1125914..1127545 (-) 1632 WP_006734426.1 ribonuclease Y -
  G6Z84_RS05550 (G6Z84_05550) recA 1127629..1128666 (-) 1038 WP_164825056.1 recombinase RecA Machinery gene
  G6Z84_RS05555 (G6Z84_05555) pgsA 1128789..1129367 (-) 579 WP_006733858.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G6Z84_RS05560 (G6Z84_05560) - 1129370..1130446 (-) 1077 WP_035511951.1 helix-turn-helix domain-containing protein -
  G6Z84_RS05565 (G6Z84_05565) - 1130555..1131778 (-) 1224 WP_006736081.1 pitrilysin family protein -
  G6Z84_RS05570 (G6Z84_05570) - 1131775..1132989 (-) 1215 WP_006732747.1 insulinase family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37165.19 Da        Isoelectric Point: 4.9848

>NTDB_id=425547 G6Z84_RS05550 WP_164825056.1 1127629..1128666(-) (recA) [Lactobacillus iners strain C0011D1]
MAKDEKKAALELALKKIEKNFGKGAVMRMGEKVDTKISTISTGSIALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGS
RVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQGRENAKQYLEEHPDIFREIN
DKVRQAYGIDSKESDEDSSEDTEQE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=425547 G6Z84_RS05550 WP_164825056.1 1127629..1128666(-) (recA) [Lactobacillus iners strain C0011D1]
TTGGCTAAAGATGAAAAAAAAGCTGCTCTTGAATTAGCCTTGAAAAAAATTGAAAAAAATTTTGGTAAAGGTGCAGTAAT
GCGAATGGGTGAAAAGGTCGATACTAAAATATCAACTATTTCTACTGGTTCGATTGCTCTTGATACTGCACTGGGAGTAG
GAGGCTATCCTCGAGGCAGAATTATTGAAGTTTATGGACCGGAAAGTTCCGGAAAAACTACAGTTGCTTTACATGCAGTA
GCTGAAGTTCAAAAAAATGGAGGAACTGCAGCATATATTGATGCAGAAAATGCTATGGATCCTGCCTATGCAGAAGCATT
AGGCGTTGATATTGATTCATTGATTTTATCACAGCCTAATACTGGTGAAGAAGGATTACAGATTGCTGATACTTTAATTT
CTAGTGGAGCGATCGACATTTTGGTGGTAGATTCTGTTGCTGCATTAGTTCCACGAGCAGAAATTGAAGGTGAGATGGGC
GATGCACACGTTGGATTACAAGCCCGCTTAATGAGTCAAGCCTTAAGAAAATTATCTGGCAATATTTCTAAGACTAAAAC
GATTGCTATTTTCATTAATCAAATACGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAACTACACCAGGTGGTCGTG
CTCTTAAGTTTTACTCTACTATTAGGTTGGAAGTAAGAAAATCAGAACAAATTAAACAAGGTAGCGATCCTATAGGAAGT
CGTGTAAAAATTAAAGTTGTCAAAAATAAGGTTGCACCTCCATTTAAGGTTGCTACAGTAGATATTATGTATGGTATTGG
TATTTCTAAGAGTGGAGAGCTTTTAGATATGGCGGTTGATAAAGATATCGTCAATAAATCTGGGGCATGGTATTCTTATG
GCGATGATCGTATCGGTCAAGGTCGAGAAAACGCTAAACAATATTTGGAGGAACATCCTGATATTTTCCGGGAAATAAAT
GATAAAGTACGACAGGCCTATGGTATTGACAGTAAAGAATCTGATGAAGATTCGAGTGAAGATACCGAGCAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.36

99.71

0.791
  recA Bacillus subtilis subsp. subtilis str. 168

71.865

94.783

0.681
  recA Streptococcus pneumoniae D39

67.341

100

0.675
  recA Streptococcus pneumoniae R6

67.341

100

0.675
  recA Streptococcus pneumoniae TIGR4

67.341

100

0.675
  recA Streptococcus pneumoniae Rx1

67.341

100

0.675
  recA Streptococcus mitis NCTC 12261

66.957

100

0.67
  recA Streptococcus mitis SK321

66.667

100

0.667
  recA Streptococcus mutans UA159

65.896

100

0.661
  recA Streptococcus pyogenes NZ131

68.997

95.362

0.658
  recA Lactococcus lactis subsp. cremoris KW2

68.085

95.362

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

99.42

0.583
  recA Acinetobacter baylyi ADP1

58.601

99.42

0.583
  recA Neisseria gonorrhoeae MS11

61.28

95.072

0.583
  recA Neisseria gonorrhoeae MS11

61.28

95.072

0.583
  recA Neisseria gonorrhoeae strain FA1090

61.28

95.072

0.583
  recA Helicobacter pylori strain NCTC11637

59.697

95.652

0.571
  recA Helicobacter pylori 26695

59.697

95.652

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

95.072

0.568
  recA Acinetobacter baumannii D1279779

60.372

93.623

0.565
  recA Pseudomonas stutzeri DSM 10701

59.502

93.043

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

93.623

0.554
  recA Glaesserella parasuis strain SC1401

54.179

100

0.545
  recA Ralstonia pseudosolanacearum GMI1000

60.064

90.725

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.764

93.333

0.539
  recA Vibrio cholerae strain A1552

57.764

93.333

0.539