Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G6M88_RS01500 Genome accession   NZ_CP049206
Coordinates   316837..317925 (-) Length   362 a.a.
NCBI ID   WP_045230325.1    Uniprot ID   A0A081CVQ6
Organism   Agrobacterium rubi strain W2/73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 311837..322925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M88_RS01490 (G6M88_01490) - 312955..313584 (+) 630 WP_065698117.1 glutathione S-transferase family protein -
  G6M88_RS01495 (G6M88_01495) alaS 313982..316645 (-) 2664 WP_065698116.1 alanine--tRNA ligase -
  G6M88_RS01500 (G6M88_01500) recA 316837..317925 (-) 1089 WP_045230325.1 recombinase RecA Machinery gene
  G6M88_RS01505 (G6M88_01505) - 318173..319111 (+) 939 WP_083212529.1 carbohydrate kinase family protein -
  G6M88_RS01510 (G6M88_01510) - 319142..320065 (+) 924 WP_065698115.1 pseudouridine-5'-phosphate glycosidase -
  G6M88_RS01515 (G6M88_01515) - 320138..322378 (-) 2241 WP_141680561.1 OmpA family protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38667.33 Da        Isoelectric Point: 5.3641

>NTDB_id=425489 G6M88_RS01500 WP_045230325.1 316837..317925(-) (recA) [Agrobacterium rubi strain W2/73]
MAQNSLRLVEDKAVDKSKALEAALSQIERSFGKGSIMKLGSNESIVEVETISTGSLSLDVALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLHNLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKTMVIFINQIRMKIGISYGSPEVTTGGNALKFYASVRLDIRRIG
AVKDREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGLVEKAGAWFSYKSQRLGQGRENAKTFL
KENPAVAEEIELALRQNAGLIAEKFLQNGGPEADADGVDPDA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=425489 G6M88_RS01500 WP_045230325.1 316837..317925(-) (recA) [Agrobacterium rubi strain W2/73]
ATGGCACAAAATTCTTTGCGTCTTGTAGAGGACAAAGCAGTGGATAAAAGCAAGGCACTGGAAGCGGCGCTTTCCCAGAT
CGAACGTTCGTTCGGCAAGGGATCGATCATGAAGCTCGGTTCCAATGAAAGTATCGTCGAGGTCGAGACCATTTCTACGG
GGTCGCTCAGCCTTGACGTCGCACTTGGTATTGGCGGTCTGCCCAAGGGCCGTATCATTGAAATTTACGGACCGGAAAGC
TCGGGCAAGACAACGCTTGCCTTGCAGACGATTGCGGAAGCCCAGAAGAAGGGCGGCATTTGCGCCTTCGTGGATGCCGA
ACATGCGCTCGACCCGGTCTATGCCCGTAAGCTCGGCGTCGATCTCCATAATCTGCTGATCTCGCAGCCGGACACAGGTG
AACAGGCGCTTGAAATCACCGATACGCTGGTGCGCTCCGGTGCCGTTGATGTTCTCGTCATCGACTCCGTTGCGGCTCTG
ACTCCACGTGCTGAAATCGAAGGCGAAATGGGTGATAGCCTTCCGGGTCTTCAGGCCCGTCTGATGAGCCAGGCGCTGCG
CAAGCTGACGGCTTCGATCTCCAAGTCGAAGACCATGGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCATCTCCT
ACGGTTCGCCGGAAGTGACGACAGGTGGTAACGCGCTGAAGTTCTATGCGTCGGTTCGTCTCGATATCCGCCGTATCGGC
GCCGTCAAGGATCGCGAAGAAGTGGTTGGCAACCAGACGCGCGTCAAGGTCGTCAAGAACAAGATGGCACCTCCCTTCAA
GCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCCAAGACCGGCGAGTTGGTGGATCTTGGCGTGAAAGCCGGTC
TGGTAGAAAAGGCGGGCGCATGGTTCTCCTACAAGAGCCAGCGTCTGGGGCAGGGGCGTGAAAACGCGAAAACCTTCCTC
AAGGAAAACCCGGCTGTGGCGGAAGAGATCGAACTGGCGCTGCGCCAGAACGCCGGACTGATCGCTGAAAAGTTCCTCCA
GAATGGTGGACCTGAAGCGGATGCGGATGGGGTCGATCCCGACGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081CVQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.761

92.541

0.627
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.761

92.541

0.627
  recA Acinetobacter baumannii D1279779

69.876

88.95

0.622
  recA Acinetobacter baylyi ADP1

69.255

88.95

0.616
  recA Ralstonia pseudosolanacearum GMI1000

70.064

86.74

0.608
  recA Glaesserella parasuis strain SC1401

68.536

88.674

0.608
  recA Neisseria gonorrhoeae strain FA1090

68.224

88.674

0.605
  recA Pseudomonas stutzeri DSM 10701

68.224

88.674

0.605
  recA Neisseria gonorrhoeae MS11

68.224

88.674

0.605
  recA Neisseria gonorrhoeae MS11

68.224

88.674

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

90.331

0.591
  recA Helicobacter pylori strain NCTC11637

65.031

90.055

0.586
  recA Helicobacter pylori 26695

64.724

90.055

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

64.417

90.055

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

90.331

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.95

88.122

0.564
  recA Streptococcus pneumoniae R6

60.725

91.436

0.555
  recA Streptococcus pneumoniae Rx1

60.725

91.436

0.555
  recA Streptococcus pneumoniae D39

60.725

91.436

0.555
  recA Streptococcus pneumoniae TIGR4

60.725

91.436

0.555
  recA Streptococcus mitis SK321

60.725

91.436

0.555
  recA Streptococcus mitis NCTC 12261

60.423

91.436

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

90.055

0.547
  recA Streptococcus mutans UA159

58.559

91.989

0.539
  recA Streptococcus pyogenes NZ131

58.663

90.884

0.533
  recA Lactococcus lactis subsp. cremoris KW2

57.958

91.989

0.533