Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CABTHER_RS00190 Genome accession   NC_016024
Coordinates   49332..50387 (-) Length   351 a.a.
NCBI ID   WP_014098558.1    Uniprot ID   G2LF87
Organism   Chloracidobacterium thermophilum B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44332..55387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CABTHER_RS00175 (Cabther_A0037) - 45502..46089 (-) 588 WP_228374055.1 DUF2934 domain-containing protein -
  CABTHER_RS00180 (Cabther_A0038) - 46383..47825 (+) 1443 WP_014098556.1 sigma-54 dependent transcriptional regulator -
  CABTHER_RS00185 (Cabther_A0039) - 47940..49316 (+) 1377 WP_014098557.1 FAD-dependent oxidoreductase -
  CABTHER_RS00190 (Cabther_A0040) recA 49332..50387 (-) 1056 WP_014098558.1 recombinase RecA Machinery gene
  CABTHER_RS00195 (Cabther_A0041) - 50638..51771 (+) 1134 WP_014098559.1 HEAT repeat domain-containing protein -
  CABTHER_RS00200 (Cabther_A0042) - 51868..53106 (-) 1239 WP_041569018.1 DNA adenine methylase -
  CABTHER_RS00205 (Cabther_A0043) - 53115..53933 (-) 819 WP_014098561.1 hypothetical protein -
  CABTHER_RS00210 (Cabther_A0044) - 53983..54933 (-) 951 WP_014098562.1 2Fe-2S iron-sulfur cluster-binding protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37514.06 Da        Isoelectric Point: 7.2972

>NTDB_id=42502 CABTHER_RS00190 WP_014098558.1 49332..50387(-) (recA) [Chloracidobacterium thermophilum B]
MTDTRQERNKAIDAAIASLEKQFGKGVVMRLGERQAIEVPAISTTCLSLDAAIGIGGVPRGRIVEIYGPESGGKTTLALH
VAAEAQRTGGQVAFIDAEHALDPGYAAKLGVDIENLFVSQPDNGEQALEIAEALVRSAAFDLVVVDSVAALVPKAELDGD
MGDALPGLQARLMSQALRKLTAVANRTNTCLIFINQIREKIGVMWGSPETTTGGRALKFYASVRIDIRRTASIKDGEEII
GSRTKAKIAKNKLAPPFKEVEFDIIYGKGICREGDLLDLGVEHKLIEKSGAWFSIKGGERLGQGRENAKQALAANPALRE
QLERELRAILMPHRVAATAPEATAKAKGASE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=42502 CABTHER_RS00190 WP_014098558.1 49332..50387(-) (recA) [Chloracidobacterium thermophilum B]
ATGACGGACACACGACAGGAACGCAACAAAGCCATTGATGCCGCCATCGCCAGCCTCGAAAAGCAGTTTGGCAAGGGTGT
CGTGATGCGCCTGGGCGAGCGGCAGGCCATTGAGGTGCCGGCCATTTCCACGACCTGCCTCAGCCTTGATGCGGCCATCG
GCATTGGTGGTGTGCCCCGGGGGCGGATCGTTGAAATCTACGGGCCGGAATCCGGCGGCAAAACGACGCTGGCCCTGCAC
GTTGCCGCCGAAGCCCAGCGCACCGGCGGACAGGTGGCCTTCATTGATGCCGAACATGCGCTCGATCCGGGCTATGCCGC
CAAACTCGGCGTGGATATTGAAAACCTCTTTGTCTCGCAACCGGATAATGGTGAGCAGGCGCTGGAAATTGCAGAAGCTC
TTGTCCGCTCGGCAGCGTTCGACCTCGTGGTTGTGGACTCTGTGGCAGCACTCGTTCCCAAAGCCGAACTCGATGGCGAC
ATGGGCGATGCCCTGCCGGGCCTTCAGGCACGGCTGATGTCCCAGGCCCTGCGCAAGCTGACCGCCGTCGCCAACCGTAC
AAACACCTGCCTGATTTTCATCAACCAGATTCGGGAAAAAATCGGCGTGATGTGGGGATCACCGGAAACGACCACCGGCG
GCCGGGCGCTCAAGTTCTACGCCTCGGTACGGATTGACATCCGCCGCACGGCCTCGATCAAGGACGGCGAGGAAATCATC
GGCAGCCGTACCAAAGCCAAAATTGCCAAAAACAAGCTGGCGCCACCGTTCAAGGAAGTTGAATTCGACATCATCTACGG
CAAGGGCATTTGCCGCGAAGGCGACCTGCTGGACCTCGGCGTGGAACACAAACTCATCGAGAAAAGCGGCGCCTGGTTTT
CCATCAAAGGCGGCGAACGCCTGGGACAGGGACGCGAAAATGCCAAGCAGGCGCTGGCCGCCAATCCGGCATTGCGCGAA
CAGCTCGAACGGGAACTGCGCGCCATCCTCATGCCCCACCGCGTTGCGGCAACCGCGCCGGAAGCCACAGCCAAAGCCAA
GGGGGCTTCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2LF87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

59.824

97.151

0.581
  recA Acinetobacter baylyi ADP1

61.145

94.587

0.578
  recA Vibrio cholerae strain A1552

59.706

96.866

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.706

96.866

0.578
  recA Helicobacter pylori strain NCTC11637

62.848

92.023

0.578
  recA Helicobacter pylori 26695

62.848

92.023

0.578
  recA Ralstonia pseudosolanacearum GMI1000

65.372

88.034

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.644

96.011

0.573
  recA Pseudomonas stutzeri DSM 10701

61.656

92.877

0.573
  recA Acinetobacter baumannii D1279779

61.656

92.877

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.453

0.564
  recA Streptococcus mutans UA159

60.308

92.593

0.558
  recA Streptococcus pyogenes NZ131

60.308

92.593

0.558
  recA Neisseria gonorrhoeae MS11

60.494

92.308

0.558
  recA Neisseria gonorrhoeae MS11

60.494

92.308

0.558
  recA Neisseria gonorrhoeae strain FA1090

60.494

92.308

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

93.162

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

91.453

0.547
  recA Latilactobacillus sakei subsp. sakei 23K

59.259

92.308

0.547
  recA Streptococcus pneumoniae D39

58.589

92.877

0.544
  recA Streptococcus pneumoniae Rx1

58.589

92.877

0.544
  recA Streptococcus pneumoniae R6

58.589

92.877

0.544
  recA Streptococcus pneumoniae TIGR4

58.589

92.877

0.544
  recA Streptococcus mitis SK321

58.769

92.593

0.544
  recA Streptococcus mitis NCTC 12261

58.769

92.593

0.544
  recA Lactococcus lactis subsp. cremoris KW2

57.362

92.877

0.533

Multiple sequence alignment