Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G4G71_RS24555 Genome accession   NZ_CP048833
Coordinates   5361498..5362553 (-) Length   351 a.a.
NCBI ID   WP_169940885.1    Uniprot ID   -
Organism   Pseudomonas multiresinivorans strain populi     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5356498..5367553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS24540 (G4G71_24495) - 5358301..5359722 (+) 1422 WP_169940879.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  G4G71_RS24545 (G4G71_24500) - 5359890..5360963 (+) 1074 WP_169940881.1 LOG family protein -
  G4G71_RS24550 (G4G71_24505) recX 5361028..5361492 (-) 465 WP_169940883.1 recombination regulator RecX -
  G4G71_RS24555 (G4G71_24510) recA 5361498..5362553 (-) 1056 WP_169940885.1 recombinase RecA Machinery gene
  G4G71_RS24560 (G4G71_24515) - 5362639..5363150 (-) 512 Protein_4858 CinA family protein -
  G4G71_RS24565 (G4G71_24520) mutS 5363233..5365806 (+) 2574 WP_169940887.1 DNA mismatch repair protein MutS -
  G4G71_RS24570 (G4G71_24525) fdxA 5365872..5366195 (+) 324 WP_015476292.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37548.88 Da        Isoelectric Point: 5.1464

>NTDB_id=423408 G4G71_RS24555 WP_169940885.1 5361498..5362553(-) (recA) [Pseudomonas multiresinivorans strain populi]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVIA
QAQKVGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQIMYGRGIYRTGEIIDLGVQLGLIEKSGAWYSYQGSKIGQGKANAAKFLEDNTEICTTLDK
AIRDQLLTNQAAPTKAELAAAEAEAEAEADY

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=423408 G4G71_RS24555 WP_169940885.1 5361498..5362553(-) (recA) [Pseudomonas multiresinivorans strain populi]
ATGGACGACAACAAGAAGCGCGCCCTGGCCGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCGATCCCTGCCATCTCCACCGGCTCGCTGGGTCTGGACATTGCGCTGGGCATCGGCG
GTCTGCCGCGCGGCCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
CAGGCGCAGAAAGTTGGCGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTGGACCCGGACTACGCCGGCAAGCTGGG
TGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATTACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCGGCTCTGGTACCCAAGGCCGAAATCGAAGGTGAGATGGGCGAT
CAGCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACTCCTCTGTTCGTCTCGACATCCGCCGGACCGGCGCGGTGAAGGAAGGCGACGAGGTGGTCGGCAGTGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTCGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATCATGTACGGCCGTGGCAT
CTACCGCACCGGCGAGATCATCGACCTGGGCGTGCAGTTGGGCCTGATCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCCAACGCCGCCAAGTTCCTGGAAGACAACACCGAGATCTGCACCACTCTCGACAAG
GCCATCCGCGATCAACTGCTGACCAATCAAGCAGCGCCGACCAAGGCCGAGCTCGCTGCGGCAGAAGCCGAAGCGGAAGC
TGAAGCCGACTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.994

98.575

0.858
  recA Acinetobacter baylyi ADP1

72.286

99.715

0.721
  recA Vibrio cholerae strain A1552

72.254

98.575

0.712
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.254

98.575

0.712
  recA Glaesserella parasuis strain SC1401

70.809

98.575

0.698
  recA Acinetobacter baumannii D1279779

73.78

93.447

0.689
  recA Ralstonia pseudosolanacearum GMI1000

68.876

98.86

0.681
  recA Neisseria gonorrhoeae MS11

71.914

92.308

0.664
  recA Neisseria gonorrhoeae MS11

71.914

92.308

0.664
  recA Neisseria gonorrhoeae strain FA1090

71.914

92.308

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.162

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.157

0.587
  recA Streptococcus mutans UA159

58.523

100

0.587
  recA Helicobacter pylori strain NCTC11637

61.329

94.302

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

91.738

0.578
  recA Helicobacter pylori 26695

60.725

94.302

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

88.889

0.556
  recA Streptococcus mitis NCTC 12261

59.509

92.877

0.553
  recA Streptococcus pyogenes NZ131

59.385

92.593

0.55
  recA Streptococcus pneumoniae R6

59.202

92.877

0.55
  recA Streptococcus pneumoniae TIGR4

59.202

92.877

0.55
  recA Streptococcus pneumoniae D39

59.202

92.877

0.55
  recA Streptococcus mitis SK321

59.202

92.877

0.55
  recA Streptococcus pneumoniae Rx1

59.202

92.877

0.55
  recA Lactococcus lactis subsp. cremoris KW2

56.347

92.023

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.864

92.308

0.516

Multiple sequence alignment