Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G3257_RS27020 Genome accession   NZ_CP048832
Coordinates   6052193..6053296 (-) Length   367 a.a.
NCBI ID   WP_176376583.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6047193..6058296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS27000 (G3257_26955) sucC 6047664..6048833 (-) 1170 WP_034788653.1 ADP-forming succinate--CoA ligase subunit beta -
  G3257_RS27005 (G3257_26960) - 6048906..6049466 (-) 561 WP_034788654.1 DUF2889 domain-containing protein -
  G3257_RS27010 (G3257_26965) - 6049745..6051283 (-) 1539 WP_034788657.1 class I SAM-dependent methyltransferase -
  G3257_RS27015 (G3257_26970) recX 6051510..6051965 (-) 456 WP_176376582.1 recombination regulator RecX -
  G3257_RS27020 (G3257_26975) recA 6052193..6053296 (-) 1104 WP_176376583.1 recombinase RecA Machinery gene
  G3257_RS27025 (G3257_26980) - 6053538..6054272 (+) 735 WP_034746066.1 response regulator transcription factor -
  G3257_RS27030 (G3257_26985) - 6054269..6055807 (+) 1539 WP_244965321.1 sensor histidine kinase -
  G3257_RS27035 (G3257_26990) - 6055800..6056105 (+) 306 WP_070281688.1 DUF4212 domain-containing protein -
  G3257_RS27040 (G3257_26995) - 6056102..6058150 (+) 2049 WP_070281689.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38958.57 Da        Isoelectric Point: 6.3110

>NTDB_id=423385 G3257_RS27020 WP_176376583.1 6052193..6053296(-) (recA) [Janthinobacterium lividum strain EIF1]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAAIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDLVVIDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEILDLGSDAKIVEKSGSWYSYNGERIGQGKDNARAFLQER
PALAREIENKVRASLGVRELPPLAAEKPDKADKAADKAAKAAEAKAE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=423385 G3257_RS27020 WP_176376583.1 6052193..6053296(-) (recA) [Janthinobacterium lividum strain EIF1]
ATGGACGATAAAAAAGCTGTAGTACCCGCATCGGAAAAAGCCAAGGCGCTCGCCGCCGCACTGGCGCAGATCGAGAAGCA
GTTTGGCAAAGGTTCGGTCATGCGCATGGATGCCAGCGCAGCGATCGAAGAAGTGCAAGTCGTGTCGACCGGTTCGCTCG
GCCTCGATATCGCGCTGGGCGTGGGCGGTTTGCCGCGTGGCCGCGTGGTGGAAATCTACGGTCCGGAATCGTCGGGTAAA
ACCACCCTGACCCTGCAAACCATTGCTGAAATGCAAAAACTGGGCGGCACCTGCGCCTTTATCGATGCCGAGCACGCGCT
GGATGTCGGTTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAACCGGATACGGGCGAGCAGGCGC
TGGAAATCTGCGACGCCCTCGTGCGTTCGGGCAGCGTCGACCTCGTCGTCATCGACTCCGTGGCCGCACTGACGCCACGC
GCCGAGATCGAAGGCGACATGGGCGATTCCCTGCCAGGCTTGCAAGCGCGCCTGATGTCGCAAGCCCTGCGCAAGCTGAC
CGGCTCTATCAACCGCACGAATACCCTGGTCATCTTCATTAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCC
CGGAAACGACCACCGGCGGCAATGCGCTGAAATTCTACGCCTCCGTGCGCCTGGATATCCGCCGCACCGGCTCGATCAAG
TCCGGCGATGAAGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAAATCCTGGACCTGGGCTCGGATGCCAAGATCGTGGAAA
AATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCGCCTTCCTGCAAGAGCGT
CCGGCGCTGGCCCGCGAAATCGAAAACAAGGTCCGCGCTTCACTGGGCGTGCGCGAACTGCCGCCGCTGGCCGCTGAAAA
GCCGGATAAAGCGGATAAAGCCGCCGACAAGGCCGCCAAGGCTGCGGAAGCCAAGGCAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.929

91.553

0.768
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae MS11

72.866

89.373

0.651
  recA Neisseria gonorrhoeae strain FA1090

72.866

89.373

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.706

92.643

0.646
  recA Vibrio cholerae strain A1552

69.706

92.643

0.646
  recA Acinetobacter baylyi ADP1

68.129

93.188

0.635
  recA Glaesserella parasuis strain SC1401

66.859

94.55

0.632
  recA Pseudomonas stutzeri DSM 10701

70.898

88.011

0.624
  recA Acinetobacter baumannii D1279779

70.279

88.011

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.366

90.736

0.602
  recA Helicobacter pylori 26695

63.205

91.826

0.58
  recA Streptococcus mutans UA159

60.057

96.185

0.578
  recA Helicobacter pylori strain NCTC11637

62.908

91.826

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

89.101

0.575
  recA Streptococcus mitis NCTC 12261

60.58

94.005

0.569
  recA Streptococcus pyogenes NZ131

63.222

89.646

0.567
  recA Streptococcus mitis SK321

60.465

93.733

0.567
  recA Streptococcus pneumoniae TIGR4

62.236

90.191

0.561
  recA Streptococcus pneumoniae Rx1

62.236

90.191

0.561
  recA Streptococcus pneumoniae D39

62.236

90.191

0.561
  recA Streptococcus pneumoniae R6

62.236

90.191

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

89.101

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

88.828

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

89.918

0.561
  recA Lactococcus lactis subsp. cremoris KW2

61.934

90.191

0.559

Multiple sequence alignment