Detailed information NTG0423385

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMOH1_RS14995
• Genome accession: NZ_CP061853
• Coordinates: 3094665..3095795 (-)
• Length: 376 a.a.
• NCBI ID: WP_110124335.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MOH1-5b
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3089665..3100795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMOH1_RS14975 (BAMOH1_14975)	-	3089777..3090628 (-)	852	WP_014418802.1	DUF72 domain-containing protein	-
BAMOH1_RS14980 (BAMOH1_14980)	-	3090655..3091008 (-)	354	WP_007408736.1	hypothetical protein	-
BAMOH1_RS14985 (BAMOH1_14985)	-	3091081..3092445 (-)	1365	WP_021493984.1	allantoinase	-
BAMOH1_RS14990 (BAMOH1_14990)	-	3092625..3094220 (+)	1596	Protein_2915	PucR family transcriptional regulator	-
BAMOH1_RS14995 (BAMOH1_14995)	rapC	3094665..3095795 (-)	1131	WP_110124335.1	tetratricopeptide repeat protein	Regulator
BAMOH1_RS19425	-	3095931..3096110 (-)	180	WP_021493988.1	hypothetical protein	-
BAMOH1_RS15000 (BAMOH1_15000)	-	3096235..3097368 (-)	1134	WP_022553736.1	hypothetical protein	-
BAMOH1_RS15005 (BAMOH1_15005)	-	3097426..3098622 (-)	1197	WP_017418981.1	tetracycline resistance MFS efflux pump	-
BAMOH1_RS15010 (BAMOH1_15010)	-	3098744..3099955 (-)	1212	WP_206695517.1	alanine--glyoxylate aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44425.86 Da
• Isoelectric Point: 6.5116

>NTDB_id=423385 BAMOH1_RS14995 WP_110124335.1 3094665..3095795(-) (rapC) [Bacillus amyloliquefaciens strain MOH1-5b]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLFYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=423385 BAMOH1_RS14995 WP_110124335.1 3094665..3095795(-) (rapC) [Bacillus amyloliquefaciens strain MOH1-5b]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATCAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTTCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCAGGAAAATTCAATGTCTATTTGTCATATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAGAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATTAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (193-252)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.633	100	0.41