Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   G4H71_RS19675 Genome accession   NZ_CP048814
Coordinates   4135061..4136104 (+) Length   347 a.a.
NCBI ID   WP_072738702.1    Uniprot ID   -
Organism   Rhodococcus triatomae strain DSM 44892     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4130061..4141104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4H71_RS19640 (G4H71_19635) - 4130283..4130912 (-) 630 WP_072738707.1 energy-coupling factor transporter transmembrane protein EcfT -
  G4H71_RS19645 (G4H71_19640) - 4130909..4131589 (-) 681 WP_072738706.1 energy-coupling factor ABC transporter ATP-binding protein -
  G4H71_RS19650 (G4H71_19645) - 4131601..4132203 (-) 603 WP_072738705.1 biotin transporter BioY -
  G4H71_RS19655 - 4132440..4132604 (+) 165 WP_169847165.1 hypothetical protein -
  G4H71_RS19660 (G4H71_19650) - 4132633..4133340 (+) 708 WP_072738759.1 PIG-L deacetylase family protein -
  G4H71_RS19665 (G4H71_19655) - 4133436..4134614 (+) 1179 WP_072738704.1 glycosyltransferase -
  G4H71_RS19670 (G4H71_19660) - 4134605..4134799 (+) 195 WP_072738703.1 DUF3046 domain-containing protein -
  G4H71_RS19675 (G4H71_19665) recA 4135061..4136104 (+) 1044 WP_072738702.1 recombinase RecA Machinery gene
  G4H71_RS19680 (G4H71_19670) recX 4136112..4136606 (+) 495 WP_246442759.1 recombination regulator RecX -
  G4H71_RS19685 (G4H71_19675) - 4136641..4137162 (-) 522 WP_139183302.1 uridine kinase -
  G4H71_RS19690 (G4H71_19680) - 4137193..4138098 (-) 906 WP_072738699.1 amino acid ABC transporter permease -
  G4H71_RS19695 (G4H71_19685) - 4138095..4138775 (-) 681 WP_072738698.1 amino acid ABC transporter permease -
  G4H71_RS19700 (G4H71_19690) - 4138863..4139696 (-) 834 WP_072738697.1 glutamate ABC transporter substrate-binding protein -
  G4H71_RS19705 (G4H71_19695) gluA 4139788..4140516 (-) 729 WP_083343205.1 glutamate ABC transporter ATP-binding protein GluA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36930.03 Da        Isoelectric Point: 5.1530

>NTDB_id=423254 G4H71_RS19675 WP_072738702.1 4135061..4136104(+) (recA) [Rhodococcus triatomae strain DSM 44892]
MAAQAHDRDKALDLALAQIDKSFGKGSVMRLGEGVRQPIAVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALH
AVANAQANGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLIRSGALDILVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKMTGALSNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYSSVRLDVRRIETLKDGTDAV
GNRTRVKVVKNKVAPPFKQAEFDILYGQGISKEGSLIDMGVEHGFIRKSGSWYTYEGDQLGQGKENARKFLLENTDIRDE
IEKKIKEKLGIGADVTVSDEAAAPAEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=423254 G4H71_RS19675 WP_072738702.1 4135061..4136104(+) (recA) [Rhodococcus triatomae strain DSM 44892]
ATGGCAGCACAGGCGCACGACAGGGACAAGGCACTGGACCTCGCCCTGGCGCAGATCGACAAGAGCTTCGGCAAGGGTTC
GGTGATGCGTCTCGGCGAGGGGGTCCGCCAGCCGATCGCCGTCATTCCCACCGGGTCCATCGCGCTGGACGTCGCACTCG
GGATCGGGGGTCTGCCCCGCGGCCGGGTCATCGAGATCTACGGCCCCGAGTCCTCGGGTAAGACAACGGTCGCTCTGCAC
GCGGTCGCGAATGCCCAGGCCAATGGGGGCATCGCCGCGTTCATCGACGCGGAGCACGCTCTCGACCCGGACTACGCGCA
GAAGCTCGGCGTCGACACCGATGCCCTGCTGGTCTCCCAGCCGGACACCGGTGAGCAGGCACTCGAGATCGCGGACATGC
TGATCCGTTCCGGTGCACTCGACATCCTCGTGGTCGACTCGGTCGCGGCCCTGGTGCCTCGCGCCGAGATCGAGGGCGAG
ATGGGCGACAGCCACGTGGGTCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGGAAGATGACCGGTGCACTCAGCAACTC
CGGGACCACCGCCATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTCATGTTCGGCTCGCCGGAAACCACCACGGGCG
GTAAGGCTCTCAAGTTCTACTCGTCGGTCCGTCTGGACGTCCGCCGGATCGAGACCCTCAAGGACGGCACCGATGCGGTC
GGCAACCGCACTCGCGTCAAGGTGGTCAAGAACAAGGTGGCTCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGG
TCAGGGAATCAGCAAGGAGGGCTCGCTGATCGACATGGGTGTCGAGCACGGCTTCATCCGTAAGTCCGGCTCCTGGTACA
CCTACGAGGGCGACCAGCTGGGGCAGGGTAAGGAGAACGCCCGCAAGTTCCTCCTCGAGAACACCGACATCAGGGACGAG
ATCGAGAAGAAGATCAAGGAGAAGCTGGGCATCGGTGCCGACGTCACGGTGTCCGACGAGGCCGCGGCGCCGGCAGAGTT
CTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.462

93.66

0.66
  recA Pseudomonas stutzeri DSM 10701

65.487

97.695

0.64
  recA Latilactobacillus sakei subsp. sakei 23K

66.066

95.965

0.634
  recA Neisseria gonorrhoeae MS11

65.465

95.965

0.628
  recA Neisseria gonorrhoeae MS11

65.465

95.965

0.628
  recA Neisseria gonorrhoeae strain FA1090

65.465

95.965

0.628
  recA Acinetobacter baylyi ADP1

63.235

97.983

0.62
  recA Acinetobacter baumannii D1279779

63.609

97.406

0.62
  recA Streptococcus mitis NCTC 12261

62.209

99.135

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.231

93.66

0.611
  recA Streptococcus pneumoniae Rx1

62.537

97.695

0.611
  recA Streptococcus pneumoniae D39

62.537

97.695

0.611
  recA Streptococcus pneumoniae R6

62.537

97.695

0.611
  recA Streptococcus pneumoniae TIGR4

62.537

97.695

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

93.372

0.599
  recA Vibrio cholerae strain A1552

64.198

93.372

0.599
  recA Streptococcus mutans UA159

63.222

94.813

0.599
  recA Helicobacter pylori 26695

64

93.66

0.599
  recA Helicobacter pylori strain NCTC11637

64

93.66

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.791

96.542

0.597
  recA Lactococcus lactis subsp. cremoris KW2

61.607

96.83

0.597
  recA Streptococcus mitis SK321

62.614

94.813

0.594
  recA Streptococcus pyogenes NZ131

62.5

94.524

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94.813

0.588
  recA Glaesserella parasuis strain SC1401

61.35

93.948

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

92.795

0.559

Multiple sequence alignment