Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYK50_RS02735 Genome accession   NZ_CP048752
Coordinates   627268..628320 (-) Length   350 a.a.
NCBI ID   WP_071003057.1    Uniprot ID   A0A1G7A5R3
Organism   Psychrobacter pacificensis strain WSY-P01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622268..633320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYK50_RS02710 (GYK50_02715) folP 623269..624192 (+) 924 WP_212564214.1 dihydropteroate synthase -
  GYK50_RS02715 (GYK50_02720) - 624287..624568 (+) 282 WP_058024586.1 succinate dehydrogenase assembly factor 2 -
  GYK50_RS02720 (GYK50_02725) - 624621..625070 (+) 450 WP_212564215.1 hypothetical protein -
  GYK50_RS02725 (GYK50_02730) - 625326..626039 (+) 714 WP_212564216.1 YidB family protein -
  GYK50_RS02730 (GYK50_02735) - 626130..627215 (-) 1086 WP_212564217.1 RecX family transcriptional regulator -
  GYK50_RS02735 (GYK50_02740) recA 627268..628320 (-) 1053 WP_071003057.1 recombinase RecA Machinery gene
  GYK50_RS02740 (GYK50_02745) trmB 629357..630196 (-) 840 WP_212564218.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GYK50_RS02745 (GYK50_02750) - 630390..631319 (+) 930 WP_212564219.1 DUF2628 domain-containing protein -
  GYK50_RS02750 (GYK50_02755) - 631343..633229 (-) 1887 WP_093071167.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37581.96 Da        Isoelectric Point: 5.0497

>NTDB_id=422625 GYK50_RS02735 WP_071003057.1 627268..628320(-) (recA) [Psychrobacter pacificensis strain WSY-P01]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDDSAILDADVVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAI
AECQKQGGTCAFIDAEHALDPVYARKLGVNTDDLLLSQPDNGEQALEITDMLVRSGAIDMIVVDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGAVKNGDDIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGAVGKAGSWYSYGDEKIGQGKANSVLFLKENPAIAKEIE
DKIRDEKLGKKKDSKAPETDDVELAPDSVQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=422625 GYK50_RS02735 WP_071003057.1 627268..628320(-) (recA) [Psychrobacter pacificensis strain WSY-P01]
ATGGACGACAATAAAGCCAAAGCCCTCAAAGCGGCATTAGGTCAAATTGAAAAGCAATTTGGTAAAAATACCATCATGCA
TCTGGGTGATGATTCAGCCATTCTTGATGCCGATGTGGTCTCAACAGGTTCTCTTGGTCTAGATATCGCACTTGGTATTG
GTGGATTGCCGAAGGGCCGTATCATCGAGATCTACGGCCCTGAGAGCTCAGGTAAAACCACAATGACCTTGCAAGCAATC
GCGGAGTGTCAAAAACAAGGCGGCACCTGTGCATTTATCGATGCTGAGCATGCGCTTGACCCTGTGTATGCACGCAAGCT
AGGCGTCAATACCGACGACTTATTACTGTCACAGCCTGATAACGGTGAGCAAGCGCTTGAAATTACTGACATGCTCGTGC
GTTCAGGCGCAATCGATATGATCGTTGTTGACTCGGTTGCTGCCTTGACTCCGCGTGCAGAAATTGAAGGCGAGATGGGC
GACTCACATATGGGCCTACAAGCGCGTCTGATGAGCCAAGCGCTACGTAAGATTACTGGTAATGCTAAACGCTCTAATTG
TATGGTTGTGTTTATTAACCAAATCCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAGACTACAACTGGTGGTAATG
CCCTTAAATTCTACGCCTCTGTACGTATGGACATTCGCCGCATTGGTGCGGTCAAAAATGGCGATGACATCATCGGTAAC
CAAACTCGTGTTAAAGTCATCAAGAACAAAATGGCACCGCCGTTCCGCCAAGCTGAGTTTGAGATTACTTATGGCGAAGG
TACCAACCACTTGGCCGAAGTGATTGACTTGGGTGTCGAGATTGGTGCCGTTGGCAAGGCAGGTTCTTGGTACAGCTATG
GCGATGAAAAAATCGGTCAAGGTAAAGCCAACTCTGTGCTTTTCTTAAAAGAAAACCCTGCTATCGCCAAAGAGATCGAA
GATAAAATTCGTGATGAAAAGCTTGGTAAGAAAAAAGATAGCAAAGCGCCTGAAACTGACGATGTAGAACTGGCACCTGA
CTCTGTACAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G7A5R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

76.369

99.143

0.757
  recA Acinetobacter baumannii D1279779

78.354

93.714

0.734
  recA Pseudomonas stutzeri DSM 10701

70.93

98.286

0.697
  recA Vibrio cholerae strain A1552

68.678

99.429

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.678

99.429

0.683
  recA Glaesserella parasuis strain SC1401

71.517

92.286

0.66
  recA Neisseria gonorrhoeae MS11

69.753

92.571

0.646
  recA Neisseria gonorrhoeae MS11

69.753

92.571

0.646
  recA Neisseria gonorrhoeae strain FA1090

69.753

92.571

0.646
  recA Ralstonia pseudosolanacearum GMI1000

70.701

89.714

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.258

93.143

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

93.429

0.603
  recA Helicobacter pylori strain NCTC11637

63.804

93.143

0.594
  recA Helicobacter pylori 26695

63.497

93.143

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.791

95.714

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

91.429

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

60.494

92.571

0.56
  recA Streptococcus mitis NCTC 12261

55.874

99.714

0.557
  recA Streptococcus mutans UA159

55.714

100

0.557
  recA Streptococcus pneumoniae D39

58.642

92.571

0.543
  recA Streptococcus pneumoniae TIGR4

58.642

92.571

0.543
  recA Streptococcus pneumoniae Rx1

58.642

92.571

0.543
  recA Streptococcus pneumoniae R6

58.642

92.571

0.543
  recA Streptococcus mitis SK321

58.333

92.571

0.54
  recA Streptococcus pyogenes NZ131

57.669

93.143

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.716

92.571

0.534

Multiple sequence alignment