Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PARA_RS03335 Genome accession   NC_015964
Coordinates   662173..663228 (-) Length   351 a.a.
NCBI ID   WP_014064545.1    Uniprot ID   A0A1F0UC94
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 657173..668228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS03290 (PARA_06570) coaA 657479..658414 (-) 936 WP_014064541.1 type I pantothenate kinase -
  PARA_RS03315 (PARA_06580) tuf 659120..660304 (+) 1185 WP_005635637.1 elongation factor Tu -
  PARA_RS03320 (PARA_06590) - 660462..661280 (+) 819 WP_014064542.1 Cof-type HAD-IIB family hydrolase -
  PARA_RS03325 (PARA_06600) crcB 661281..661676 (+) 396 WP_014064543.1 fluoride efflux transporter CrcB -
  PARA_RS03330 (PARA_06610) recX 661651..662103 (-) 453 WP_014064544.1 recombination regulator RecX -
  PARA_RS03335 (PARA_06620) recA 662173..663228 (-) 1056 WP_014064545.1 recombinase RecA Machinery gene
  PARA_RS03340 (PARA_06630) - 663365..664207 (-) 843 WP_014064546.1 patatin-like phospholipase family protein -
  PARA_RS03345 (PARA_06640) sxy/tfoX 664434..665099 (+) 666 WP_014064547.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37570.03 Da        Isoelectric Point: 4.9529

>NTDB_id=42237 PARA_RS03335 WP_014064545.1 662173..663228(-) (recA) [Haemophilus parainfluenzae T3T1]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTQALDVESVSTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKVGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGDEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKSDEL
EAKLRAELVANPEQALMADIEQSNDDAESDF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=42237 PARA_RS03335 WP_014064545.1 662173..663228(-) (recA) [Haemophilus parainfluenzae T3T1]
ATGGCAACTCAAGAAGAAAAGCAAAAAGCGCTCGCCGCAGCACTTGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCAAT
TATGAAATTGGGCGATACTCAAGCCCTTGATGTTGAATCTGTTTCAACGGGTTCTTTAGGTCTTGATGTCGCTCTTGGTA
TTGGTGGTTTACCAATGGGTCGTATTGTTGAAATTTTTGGACCTGAATCTTCTGGTAAAACAACCTTAACTTTATCTGTT
ATCGCTCAAGCACAAAAAGTAGGTAAAACCTGTGCGTTTATCGATGCGGAGCATGCACTTGATCCTATTTATGCAGCAAA
ACTTGGCGTTGATGTGAAAGAACTTTTAGTCTCCCAGCCAGACAATGGTGAACAAGCACTTGAAATTTGTGATGCCTTAG
TACGCTCTGGAGCTGTAGATGTGGTCATTGTAGACTCAGTTGCTGCACTTACCCCGAAAGCTGAAATTGAAGGTGAAATG
GGAGATTCACACATGGGTTTACAAGCGCGTTTAATGTCTCAAGCACTACGTAAATTAACCGGTCAAATCAAAAATGCAAA
CTGTCTTGTTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTCATGTTTGGTAACCCAGAAACCACAACTGGTGGTA
ACGCGCTAAAATTCTACTCTTCTGTTCGTTTAGATATCCGTCGTACAGGTTCAGTTAAAGATGGAGATGAGGTTATTGGT
AACGAAACTCGTGTAAAAGTAGTTAAAAACAAATTAGCCGCACCTTTCCGCCAAGTAGATTTCCAAATTCTTTATGGAGA
AGGTATCTCTAAAGCTGGCGAATTAATTGAACTTGGCGTTAAACACAAACTTGTTGAGAAATCCGGTGCATGGTATGCAT
ATAACGGTGAAAAAATTGGCCAAGGTAAAGCCAATGCAATGAAGTGGTTACATGAAAACCCTGCAAAATCAGATGAACTT
GAAGCGAAGCTTCGTGCTGAATTAGTCGCTAACCCAGAACAAGCATTAATGGCGGACATTGAACAATCTAATGATGACGC
AGAAAGCGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F0UC94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.522

98.291

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.522

98.291

0.752
  recA Glaesserella parasuis strain SC1401

76.453

98.006

0.749
  recA Pseudomonas stutzeri DSM 10701

77.846

92.593

0.721
  recA Acinetobacter baylyi ADP1

70.029

98.86

0.692
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae MS11

74.923

92.023

0.689
  recA Neisseria gonorrhoeae strain FA1090

74.923

92.023

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.041

90.883

0.664
  recA Acinetobacter baumannii D1279779

71.166

92.877

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.985

95.442

0.601
  recA Helicobacter pylori 26695

61.471

96.866

0.595
  recA Helicobacter pylori strain NCTC11637

60.882

96.866

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

66.234

87.749

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.722

90.313

0.575
  recA Streptococcus pneumoniae TIGR4

56.857

99.715

0.567
  recA Streptococcus pneumoniae Rx1

56.857

99.715

0.567
  recA Streptococcus pneumoniae D39

56.857

99.715

0.567
  recA Streptococcus pneumoniae R6

56.857

99.715

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

93.162

0.564
  recA Streptococcus mutans UA159

59.633

93.162

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.023

0.553
  recA Streptococcus mitis NCTC 12261

59.327

93.162

0.553
  recA Streptococcus mitis SK321

59.021

93.162

0.55
  recA Streptococcus pyogenes NZ131

58.537

93.447

0.547
  recA Lactococcus lactis subsp. cremoris KW2

58.462

92.593

0.541

Multiple sequence alignment