Detailed information NTG0421592

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: FY134_RS07860
• Genome accession: NZ_CP048558
• Coordinates: 1584534..1585625 (-)
• Length: 363 a.a.
• NCBI ID: WP_006314063.1
• Uniprot ID: A0A3G2CQK8
• Organism: Agrobacterium fabrum strain Kin001
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1579534..1590625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY134_RS07845 (FY134_07800)	-	1580442..1581068 (+)	627	WP_006314066.1	glutathione S-transferase family protein	-
FY134_RS07850 (FY134_07805)	-	1581144..1581527 (-)	384	WP_006314065.1	VOC family protein	-
FY134_RS07855 (FY134_07810)	alaS	1581641..1584304 (-)	2664	WP_080808201.1	alanine--tRNA ligase	-
FY134_RS07860 (FY134_07815)	recA	1584534..1585625 (-)	1092	WP_006314063.1	recombinase RecA	Machinery gene
FY134_RS07865 (FY134_07820)	-	1585872..1586813 (+)	942	WP_035258391.1	carbohydrate kinase family protein	-
FY134_RS07870 (FY134_07825)	-	1586842..1587765 (+)	924	WP_111807066.1	pseudouridine-5'-phosphate glycosidase	-
FY134_RS07875 (FY134_07830)	-	1588049..1590277 (-)	2229	WP_111807097.1	OmpA family protein	-

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 38802.23 Da
• Isoelectric Point: 4.9684

>NTDB_id=421592 FY134_RS07860 WP_006314063.1 1584534..1585625(-) (recA) [Agrobacterium fabrum strain Kin001]
MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKEREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFL
RDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSDEG

Nucleotide

• Length: 1092 bp

>NTDB_id=421592 FY134_RS07860 WP_006314063.1 1584534..1585625(-) (recA) [Agrobacterium fabrum strain Kin001]
ATGGCACAAAATTCTTTGCGTCTCGTAGAGGATAAATCGGTGGATAAAAGCAAGGCACTGGAAGCGGCGCTCTCCCAGAT
CGAACGGTCGTTCGGCAAGGGATCGATCATGAAGCTCGGTTCCAATGAAAATGTGGTTGAAGTGGAAACCGTTTCGACGG
GCTCGCTCAGCCTGGATATCGCGCTCGGCATCGGCGGCTTGCCGAAGGGGCGTATCATTGAGATTTACGGCCCGGAAAGC
TCCGGTAAAACGACGCTTGCGCTGCAGACGATCGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTGGACGCCGA
ACACGCGCTCGATCCGGTTTATGCCCGCAAGCTCGGTGTGGATTTGCAGAGCCTTCTGATCTCGCAGCCGGATACCGGCG
AGCAGGCGCTTGAGATCACCGATACGCTGGTGCGTTCGGGCGCGGTTGACGTTCTTGTCATCGATTCGGTTGCGGCCTTG
ACGCCGCGGGCGGAAATCGAAGGCGAAATGGGCGATAGCCTGCCGGGTCTTCAGGCCCGTCTGATGAGCCAGGCGCTGCG
CAAGCTGACCGCCTCGATCTCCAAGTCGAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGT
TTGGTTCGCCGGAAACGACGACGGGCGGTAACGCGCTGAAGTTTTACGCCTCCGTGCGCCTCGACATCCGCCGTATCGGC
GCCGTCAAGGAGCGCGAAGAGGTTGTCGGCAACCAGACGCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAA
GCAGGTTGAATTCGACATCATGTATGGCGAAGGTGTTTCCAAGACCGGTGAGCTGGTCGATCTCGGCGTGAAGGCCGGTA
TCGTCGAGAAGTCCGGCGCCTGGTTCTCCTATAATAGTCAGCGTCTGGGGCAGGGGCGTGAAAACGCCAAGACCTTCCTG
CGCGACAATCCGGATACGGCCAATGAGATCGAACTGGCGCTGCGCCAGAATGCCGGTCTGATTGCCGACCGCTTCCTGCA
GAATGGTGGCCCGGACGCCGGTGAAGGCGACGACGGGAGCGACGAGGGCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (18-280)

3D structure

• AlphaFold DB: A0A3G2CQK8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baumannii D1279779	71.739	88.705	0.636
recA	Acinetobacter baylyi ADP1	71.429	88.705	0.634
recA	Ralstonia pseudosolanacearum GMI1000	72.611	86.501	0.628
recA	Vibrio cholerae strain A1552	70.807	88.705	0.628
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70.807	88.705	0.628
recA	Glaesserella parasuis strain SC1401	66.181	94.49	0.625
recA	Neisseria gonorrhoeae MS11	69.04	88.981	0.614
recA	Neisseria gonorrhoeae MS11	69.04	88.981	0.614
recA	Neisseria gonorrhoeae strain FA1090	69.04	88.981	0.614
recA	Pseudomonas stutzeri DSM 10701	69.47	88.43	0.614
recA	Bacillus subtilis subsp. subtilis str. 168	65.951	89.807	0.592
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.138	90.083	0.587
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.138	90.083	0.587
recA	Helicobacter pylori strain NCTC11637	64.417	89.807	0.579
recA	Helicobacter pylori 26695	64.11	89.807	0.576
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	64.038	87.328	0.559
recA	Latilactobacillus sakei subsp. sakei 23K	62.27	89.807	0.559
recA	Streptococcus mitis SK321	61.329	91.185	0.559
recA	Streptococcus mitis NCTC 12261	61.329	91.185	0.559
recA	Streptococcus pneumoniae Rx1	61.027	91.185	0.556
recA	Streptococcus pneumoniae TIGR4	61.027	91.185	0.556
recA	Streptococcus pneumoniae D39	61.027	91.185	0.556
recA	Streptococcus pneumoniae R6	61.027	91.185	0.556
recA	Lactococcus lactis subsp. cremoris KW2	59.76	91.736	0.548
recA	Streptococcus pyogenes NZ131	60.486	90.634	0.548
recA	Streptococcus mutans UA159	59.819	91.185	0.545