Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACIFE_RS08810 Genome accession   NC_015942
Coordinates   1820273..1821319 (-) Length   348 a.a.
NCBI ID   WP_014029215.1    Uniprot ID   A0A1B9BWC4
Organism   Acidithiobacillus ferrivorans SS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815273..1826319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFE_RS08790 (Acife_1828) hypA 1815970..1816311 (-) 342 WP_014029211.1 hydrogenase maturation nickel metallochaperone HypA -
  ACIFE_RS08795 (Acife_1829) - 1816536..1817132 (+) 597 WP_014029212.1 hypothetical protein -
  ACIFE_RS08800 (Acife_1830) alaS 1817129..1819765 (-) 2637 WP_014029213.1 alanine--tRNA ligase -
  ACIFE_RS08805 (Acife_1831) - 1819814..1820272 (-) 459 WP_014029214.1 regulatory protein RecX -
  ACIFE_RS08810 (Acife_1832) recA 1820273..1821319 (-) 1047 WP_014029215.1 recombinase RecA Machinery gene
  ACIFE_RS08815 (Acife_1833) - 1821538..1822386 (-) 849 WP_014029216.1 CinA family protein -
  ACIFE_RS08820 (Acife_1834) - 1822383..1822871 (-) 489 WP_014029217.1 phosphatidylglycerophosphatase A -
  ACIFE_RS08825 (Acife_1835) thiL 1822861..1823883 (-) 1023 WP_014029218.1 thiamine-phosphate kinase -
  ACIFE_RS08830 (Acife_1836) gluQRS 1823945..1824820 (+) 876 WP_014029219.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  ACIFE_RS08835 (Acife_1837) sfsA 1824847..1825545 (+) 699 WP_014029220.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37262.55 Da        Isoelectric Point: 5.6868

>NTDB_id=42127 ACIFE_RS08810 WP_014029215.1 1820273..1821319(-) (recA) [Acidithiobacillus ferrivorans SS3]
MDEQRSKALAAALSQIDKQFGKGAVMRLGDHNAIKDIAVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHVI
ASCQAAGGTAAFIDAEHALDPSYAHKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVIDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGAIKKSDEVVGN
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIVEKSGAWYSCQGERIGQGKDNARQYLKEHPELAVNIE
QRIRAAAAGHPLAFAEDVVEPVEPAAVE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=42127 ACIFE_RS08810 WP_014029215.1 1820273..1821319(-) (recA) [Acidithiobacillus ferrivorans SS3]
ATGGATGAACAGCGTAGCAAGGCCCTTGCGGCCGCCCTGTCACAGATCGACAAGCAGTTTGGTAAAGGCGCCGTCATGCG
TCTCGGCGATCACAATGCCATCAAAGATATAGCGGTCTACTCCACCGGTTCGTTAGGCTTGGACCTCGCCTTGGGGGTGG
GCGGCCTGCCCCGGGGCAGGGTGGTGGAAATTTACGGGCCGGAATCTTCCGGCAAGACGACGCTCACCCTGCACGTCATC
GCCAGCTGTCAGGCAGCCGGAGGCACAGCGGCCTTCATTGATGCCGAGCACGCCCTCGACCCCAGCTATGCCCACAAGCT
CGGCGTTGATCTGGAAAACCTGCTGATCTCTCAGCCCGATACCGGCGAACAGGCGCTGGAAATCGCTGACATGCTGGTGC
GTTCGGGGGCAGTGGACCTGATTGTGATCGACTCCGTGGCAGCGCTGACCCCCAAAGCGGAAATTGAAGGTGACATGGGC
GACTCCCACGTCGGTCTGCAAGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAATATCTCGCGGACCAACAC
TCTGGTTATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTACGGCAGCCCGGAGACGACCACCGGCGGTAATG
CGCTCAAGTTCTACGCCTCCGTGCGTCTCGATATCCGCCGCATCGGCGCGATCAAAAAGAGCGACGAAGTGGTAGGTAAT
GATACCCGCGTTAAGGTGGTCAAAAATAAGGTGGCCCCCCCTTTCCGCGAAGCCGAATTCGCCATCTACTACGGTGAAGG
CATCTCCCGTCTCTCCGAGTTGGTGGACCTGGGTGTGAAGTTCGATATTGTGGAGAAAAGCGGGGCTTGGTACAGCTGCC
AGGGGGAGCGTATCGGCCAAGGCAAGGACAATGCCCGTCAGTACCTCAAGGAACATCCGGAGCTGGCAGTCAATATCGAG
CAGCGGATACGGGCAGCGGCAGCAGGACATCCCCTGGCCTTTGCCGAAGACGTGGTCGAGCCGGTCGAGCCCGCAGCGGT
CGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9BWC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.462

93.391

0.695
  recA Ralstonia pseudosolanacearum GMI1000

73.78

94.253

0.695
  recA Acinetobacter baylyi ADP1

73.765

93.103

0.687
  recA Acinetobacter baumannii D1279779

73.457

93.103

0.684
  recA Neisseria gonorrhoeae MS11

72.615

93.391

0.678
  recA Neisseria gonorrhoeae MS11

72.615

93.391

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.615

93.391

0.678
  recA Glaesserella parasuis strain SC1401

70.821

94.54

0.67
  recA Vibrio cholerae strain A1552

70.988

93.103

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.103

0.661
  recA Helicobacter pylori strain NCTC11637

66.972

93.966

0.629
  recA Helicobacter pylori 26695

66.667

93.966

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

94.253

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.462

93.391

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.625

91.954

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.692

93.391

0.595
  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58
  recA Streptococcus pneumoniae D39

61.35

93.678

0.575
  recA Streptococcus pneumoniae TIGR4

61.35

93.678

0.575
  recA Streptococcus pneumoniae R6

61.35

93.678

0.575
  recA Streptococcus mutans UA159

61.35

93.678

0.575
  recA Streptococcus pneumoniae Rx1

61.35

93.678

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

61.728

93.103

0.575
  recA Streptococcus mitis SK321

61.231

93.391

0.572
  recA Streptococcus mitis NCTC 12261

61.231

93.391

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.633

93.966

0.56

Multiple sequence alignment