Detailed information NTG0420879

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: ICI53_RS14225
• Genome accession: NZ_CP061206
• Coordinates: 3024838..3025818 (+)
• Length: 326 a.a.
• NCBI ID: WP_001327409.1
• Uniprot ID: -
• Organism: Escherichia coli strain DA61218
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3019838..3030818

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ICI53_RS14195 (ICI53_14195)	yggM	3020439..3021446 (+)	1008	WP_000745192.1	DUF1202 family protein	-
ICI53_RS14200 (ICI53_14200)	hemW	3021515..3022651 (-)	1137	WP_000239981.1	radical SAM family heme chaperone HemW	-
ICI53_RS14205 (ICI53_14205)	rdgB	3022644..3023237 (-)	594	WP_001174738.1	XTP/dITP diphosphatase	-
ICI53_RS14210 (ICI53_14210)	yggU	3023245..3023535 (-)	291	WP_001277222.1	DUF167 family protein YggU	-
ICI53_RS14215 (ICI53_14215)	yggT	3023532..3024098 (-)	567	WP_001094831.1	osmotic shock tolerance protein YggT	-
ICI53_RS14220 (ICI53_14220)	yggS	3024116..3024820 (-)	705	WP_000997795.1	pyridoxal phosphate homeostasis protein	-
ICI53_RS14225 (ICI53_14225)	pilT	3024838..3025818 (+)	981	WP_001327409.1	type IV pilus twitching motility protein PilT	Machinery gene
ICI53_RS14230 (ICI53_14230)	ruvX	3025992..3026408 (-)	417	WP_000017106.1	Holliday junction resolvase RuvX	-
ICI53_RS14235 (ICI53_14235)	yqgE	3026408..3026971 (-)	564	WP_001053178.1	YqgE/AlgH family protein	-
ICI53_RS14240 (ICI53_14240)	gshB	3027080..3028030 (-)	951	WP_000593261.1	glutathione synthase	-
ICI53_RS14245 (ICI53_14245)	rsmE	3028043..3028774 (-)	732	WP_001222509.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-
ICI53_RS14250 (ICI53_14250)	endA	3028854..3029561 (-)	708	WP_001327408.1	deoxyribonuclease I	-
ICI53_RS14255 (ICI53_14255)	yggI	3029656..3030153 (-)	498	WP_000858396.1	SprT family zinc-dependent metalloprotease	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36089.34 Da
• Isoelectric Point: 5.9975

>NTDB_id=420879 ICI53_RS14225 WP_001327409.1 3024838..3025818(+) (pilT) [Escherichia coli strain DA61218]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDALDVEELLREWLDDDQRTILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYTSQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VKEGRL

Nucleotide

• Length: 981 bp

>NTDB_id=420879 ICI53_RS14225 WP_001327409.1 3024838..3025818(+) (pilT) [Escherichia coli strain DA61218]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGGCGAATGGAAGCTGCGCCGTTTGATGCGCTGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGACAATATTGCTGGAGAATGGTCAGTTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATACCAGTCAGCGATGTTTGATCCAACAGCGGGAGATTGGTTTGCACTGTATGACTTTCGCATCGGGATTGCG
GGCTGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGATAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCGACATTACACACGCGCGGCGCAGCGCAGGCAGTTGAGCGACTGGTGGATTCG
TTTCCGGCGCAGGAAAAAGATCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCGGTGTTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACACCCGCGGTGGGGAATTTGATTCGTGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGAAAGAAGGGCGCTTGTGA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (62-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	49.541	100	0.497
pilT	Vibrio cholerae strain A1552	49.541	100	0.497
pilT	Neisseria meningitidis 8013	48.78	100	0.491
pilT	Neisseria gonorrhoeae MS11	48.476	100	0.488
pilT	Acinetobacter baumannii D1279779	46.789	100	0.469
pilT	Acinetobacter baylyi ADP1	46.789	100	0.469
pilT	Acinetobacter nosocomialis M2	46.789	100	0.469
pilT	Acinetobacter baumannii strain A118	46.789	100	0.469
pilT	Pseudomonas stutzeri DSM 10701	46.483	100	0.466
pilT	Pseudomonas aeruginosa PAK	46.177	100	0.463
pilT	Legionella pneumophila strain Lp02	45.26	100	0.454
pilT	Legionella pneumophila strain ERS1305867	45.26	100	0.454
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.138	97.546	0.411
pilU	Vibrio cholerae strain A1552	40.379	97.239	0.393
pilU	Pseudomonas stutzeri DSM 10701	37.576	100	0.38
pilU	Acinetobacter baylyi ADP1	36.957	98.773	0.365
pilB	Legionella pneumophila strain ERS1305867	31.152	100	0.365