Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GZH82_RS08380 Genome accession   NZ_CP048279
Coordinates   1795913..1796956 (-) Length   347 a.a.
NCBI ID   WP_019165446.1    Uniprot ID   A0A6P1WW13
Organism   Staphylococcus sp. MI 10-1553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1790913..1801956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH82_RS08360 (GZH82_08360) - 1791001..1793175 (-) 2175 WP_162682107.1 heavy metal translocating P-type ATPase -
  GZH82_RS08365 (GZH82_08365) - 1793159..1793539 (-) 381 WP_162682108.1 metalloregulator ArsR/SmtB family transcription factor -
  GZH82_RS08370 (GZH82_08370) - 1793738..1793956 (+) 219 WP_096540850.1 hypothetical protein -
  GZH82_RS08375 (GZH82_08375) rny 1794127..1795686 (-) 1560 WP_019165445.1 ribonuclease Y -
  GZH82_RS08380 (GZH82_08380) recA 1795913..1796956 (-) 1044 WP_019165446.1 recombinase RecA Machinery gene
  GZH82_RS08385 (GZH82_08385) - 1797095..1798270 (-) 1176 WP_162682109.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  GZH82_RS08390 (GZH82_08390) pgsA 1798491..1799075 (-) 585 WP_162682110.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GZH82_RS08395 (GZH82_08395) - 1799117..1799512 (-) 396 WP_162682111.1 helix-turn-helix domain-containing protein -
  GZH82_RS08400 (GZH82_08400) - 1799531..1800364 (-) 834 WP_162682112.1 DUF3388 domain-containing protein -
  GZH82_RS08405 (GZH82_08405) - 1800421..1801125 (-) 705 WP_162682113.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37967.04 Da        Isoelectric Point: 5.0169

>NTDB_id=420557 GZH82_RS08380 WP_019165446.1 1795913..1796956(-) (recA) [Staphylococcus sp. MI 10-1553]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDLGVQYDIVDKSGAWYSYNGERMGQGKENVKQFLLENPKLEDEIDR
KLREKLGIYDGDVEEPEQEETQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=420557 GZH82_RS08380 WP_019165446.1 1795913..1796956(-) (recA) [Staphylococcus sp. MI 10-1553]
TTGGATAATGAACGTCAAAAAGCGCTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCCGTCATGAA
ACTGGGCGAGAATAAAGATCGCCGCGTTTCAAGTGTTTCAAGTGGTTCGGTAACGCTAGACCATGCATTAGGGGTTGGCG
GCTATCCTAAAGGTCGTATCATCGAAGTTTATGGTCCCGAAAGTTCTGGTAAAACAACAGTTGCTTTACATGCCATTGCT
GAAGTACAAAAAAATGGCGGTATTGCTGCATTTATTGATGCCGAACACGCACTCGACCCAGTTTACGCTGAAGCATTAGG
TGTAGATATTGACAACTTGTACCTTTCACAACCAGACCACGGTGAACAAGGACTTGAAATTGCAGAAGCCTTTGTCAGAA
GTGGCGCAGTGGACATTATCATTGTCGACTCAGTTGCGGCATTGACACCTAAAGCTGAAATTGAGGGTGAAATGGGTGAT
ACGCATGTTGGTTTACAAGCGCGTTTAATGTCTCAAGCATTGCGCAAACTTTCTGCAGCTATTTCAAAATCAAAAACGAC
AGCTATCTTTATTAACCAAATCCGTGAAAAAGTAGGTGTCATGTTCGGTAACCCTGAAACGACACCAGGGGGCCGTGCAC
TGAAATTCTACAGTTCAGTTCGTTTAGAAGTACGTCGTGCGGAACAATTGAAGCAAGGCCAAGATATTGTAGGTAACCGT
ACAAAAATTAAAGTTGTTAAAAATAAAGTGGCACCACCATTCAAAGTAGCAGAAGTGGATATCATGTATGGTAAAGGGAT
TTCACGAGAAGGCGAATTGATTGATTTAGGTGTACAATACGACATTGTAGATAAATCAGGTGCTTGGTATTCATACAACG
GTGAACGTATGGGTCAAGGTAAAGAGAACGTGAAACAATTTTTACTTGAAAACCCTAAACTTGAAGATGAAATTGACCGT
AAATTACGTGAAAAACTCGGCATTTATGATGGTGATGTAGAAGAACCTGAACAAGAAGAAACACAAACACTTTTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1WW13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.948

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.828

100

0.7
  recA Streptococcus pyogenes NZ131

70.213

94.813

0.666
  recA Streptococcus mutans UA159

66.189

100

0.666
  recA Streptococcus pneumoniae Rx1

65.805

100

0.66
  recA Streptococcus pneumoniae D39

65.805

100

0.66
  recA Streptococcus pneumoniae R6

65.805

100

0.66
  recA Streptococcus pneumoniae TIGR4

65.805

100

0.66
  recA Streptococcus mitis NCTC 12261

65.598

98.847

0.648
  recA Streptococcus mitis SK321

66.667

95.965

0.64
  recA Acinetobacter baumannii D1279779

62.644

100

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baylyi ADP1

61.891

100

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.438

94.813

0.611
  recA Neisseria gonorrhoeae MS11

61.988

98.559

0.611
  recA Neisseria gonorrhoeae MS11

61.988

98.559

0.611
  recA Neisseria gonorrhoeae strain FA1090

61.988

98.559

0.611
  recA Helicobacter pylori 26695

62.805

94.524

0.594
  recA Vibrio cholerae strain A1552

63.19

93.948

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.19

93.948

0.594
  recA Helicobacter pylori strain NCTC11637

62.5

94.524

0.591
  recA Ralstonia pseudosolanacearum GMI1000

64.856

90.202

0.585
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

95.389

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568

Multiple sequence alignment