Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYM74_RS09465 Genome accession   NZ_CP048265
Coordinates   2180213..2181256 (+) Length   347 a.a.
NCBI ID   WP_220217977.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175213..2186256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM74_RS09450 (GYM74_09425) - 2176216..2176800 (-) 585 WP_220217974.1 membrane integrity-associated transporter subunit PqiC -
  GYM74_RS09455 (GYM74_09430) pqiB 2176793..2178436 (-) 1644 WP_220217975.1 intermembrane transport protein PqiB -
  GYM74_RS09460 (GYM74_09435) - 2178447..2179694 (-) 1248 WP_220217976.1 PqiA/YebS family transporter subunit -
  GYM74_RS09465 (GYM74_09440) recA 2180213..2181256 (+) 1044 WP_220217977.1 recombinase RecA Machinery gene
  GYM74_RS09470 (GYM74_09445) - 2181259..2181759 (+) 501 WP_220217978.1 regulatory protein RecX -
  GYM74_RS09475 (GYM74_09450) alaS 2181964..2184597 (+) 2634 WP_220217979.1 alanine--tRNA ligase -
  GYM74_RS09480 (GYM74_09455) csrA 2184738..2184938 (+) 201 WP_220217980.1 carbon storage regulator CsrA -
  GYM74_RS09505 (GYM74_09480) - 2185937..2186218 (-) 282 WP_220217981.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37223.54 Da        Isoelectric Point: 4.8504

>NTDB_id=420316 GYM74_RS09465 WP_220217977.1 2180213..2181256(+) (recA) [Gilliamella sp. ESL0405]
MNENKQRALSAALSQIEKQFGKGSIMRLGDTQTLDVDAVSTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKEGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKEGELIDLGVKHKLVDKAGAWYSYNGEKVGQGKANSIKFLQEHPEVANELEA
KLRDLLLNSPAVFSADDQETITEEESF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=420316 GYM74_RS09465 WP_220217977.1 2180213..2181256(+) (recA) [Gilliamella sp. ESL0405]
ATGAATGAAAACAAACAACGTGCACTTTCAGCTGCATTAAGTCAAATCGAAAAACAATTTGGTAAAGGTTCAATTATGCG
TTTAGGTGATACTCAAACGCTAGATGTTGATGCGGTTTCTACTGGCTCCTTAGGACTCGATATAGCACTAGGTATCGGTG
GTTTGCCAATGGGTAGAATCGTTGAAATCTTTGGGCCAGAATCTTCCGGTAAAACAACACTAACCTTATCGGTTATTGCG
CAAGCCCAAAAAGAAGGGAAAACATGTGCATTTATTGATGCTGAACATGCATTAGATCCAATTTATGCTGCTAAATTAGG
CGTGCAAGTTGATGATCTATTAGTTTCACAACCTGATACTGGCGAACAAGCGCTAGAAATTTGTGATGCACTGGTTCGCT
CTGGTGCTGTTGATGTCATTATTGTTGACTCCGTTGCTGCATTAACACCAAAAGCCGAAATCGAAGGCGAAATGGGTGAC
TCTCATATGGGCTTACAAGCAAGATTGATGTCTCAAGCATTACGAAAATTAACCGCCAATATTAAAAACGCCAACTGCTT
AGTTGTTTTCATTAACCAAATTCGTATGAAAATCGGCGTTATGTTCGGTAATCCGGAAACAACAACGGGTGGTAATGCCC
TAAAATTCTACGCCTCTGTGCGTTTAGATATCCGTCGTACCGGTGCTGTTAAAGAAGGCGAAGATGTGATTGGTAGTGAT
ACCCGTGTCAAAGTCGTTAAAAATAAAGTGGCGGCGCCATTTAGACAAGCTGAATTCCAAATTCTTTATGGTTGTGGTAT
CTCCAAAGAAGGCGAATTAATTGATTTAGGTGTTAAACATAAATTAGTGGATAAAGCTGGTGCTTGGTACAGCTATAACG
GTGAAAAAGTTGGTCAAGGTAAAGCTAATTCCATTAAGTTTTTACAAGAACACCCTGAAGTTGCTAACGAACTAGAAGCC
AAACTTCGTGACTTATTACTCAACAGCCCAGCGGTATTTTCTGCTGACGACCAAGAGACAATAACCGAGGAAGAAAGCTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.232

99.424

0.758
  recA Vibrio cholerae strain A1552

79.573

94.524

0.752
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.573

94.524

0.752
  recA Glaesserella parasuis strain SC1401

73.295

100

0.744
  recA Acinetobacter baylyi ADP1

72.464

99.424

0.72
  recA Acinetobacter baumannii D1279779

72.948

94.813

0.692
  recA Neisseria gonorrhoeae MS11

71.779

93.948

0.674
  recA Neisseria gonorrhoeae MS11

71.779

93.948

0.674
  recA Neisseria gonorrhoeae strain FA1090

71.779

93.948

0.674
  recA Ralstonia pseudosolanacearum GMI1000

73.333

90.778

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

97.983

0.617
  recA Helicobacter pylori strain NCTC11637

61.357

97.695

0.599
  recA Helicobacter pylori 26695

60.767

97.695

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.389

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.507

0.585
  recA Streptococcus pneumoniae R6

57.803

99.712

0.576
  recA Streptococcus pneumoniae Rx1

57.803

99.712

0.576
  recA Streptococcus pneumoniae D39

57.803

99.712

0.576
  recA Streptococcus pneumoniae TIGR4

57.803

99.712

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.736

93.948

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

92.507

0.568
  recA Streptococcus mitis SK321

60.062

93.084

0.559
  recA Streptococcus mitis NCTC 12261

59.752

93.084

0.556
  recA Streptococcus pyogenes NZ131

59.021

94.236

0.556
  recA Streptococcus mutans UA159

59.077

93.66

0.553
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536

Multiple sequence alignment