Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYM75_RS09460 Genome accession   NZ_CP048264
Coordinates   2125778..2126818 (+) Length   346 a.a.
NCBI ID   WP_220215715.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2120778..2131818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM75_RS09445 (GYM75_09440) - 2121744..2122325 (-) 582 WP_220215712.1 ABC-type transport auxiliary lipoprotein family protein -
  GYM75_RS09450 (GYM75_09445) pqiB 2122325..2123962 (-) 1638 WP_220215713.1 intermembrane transport protein PqiB -
  GYM75_RS09455 (GYM75_09450) - 2123978..2125228 (-) 1251 WP_220215714.1 PqiA/YebS family transporter subunit -
  GYM75_RS09460 (GYM75_09455) recA 2125778..2126818 (+) 1041 WP_220215715.1 recombinase RecA Machinery gene
  GYM75_RS09465 (GYM75_09460) - 2126818..2127318 (+) 501 WP_220215716.1 regulatory protein RecX -
  GYM75_RS09470 (GYM75_09465) alaS 2127524..2130157 (+) 2634 WP_220215717.1 alanine--tRNA ligase -
  GYM75_RS09475 (GYM75_09470) csrA 2130289..2130489 (+) 201 WP_065559044.1 carbon storage regulator CsrA -
  GYM75_RS09500 (GYM75_09495) - 2131264..2131536 (-) 273 WP_220215718.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37153.40 Da        Isoelectric Point: 4.7828

>NTDB_id=420304 GYM75_RS09460 WP_220215715.1 2125778..2126818(+) (recA) [Gilliamella sp. ESL0441]
MNENKQRALSAALSQIEKQFGKGSIMRLGDTQTLDVDAVSTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKEGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKDGELIDLGVKHKLVDKAGAWYSYNGEKVGQGKANSIKFLQEHPEIANELET
KLRELLLNSPAVFSDEDTSPEDESFE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=420304 GYM75_RS09460 WP_220215715.1 2125778..2126818(+) (recA) [Gilliamella sp. ESL0441]
ATGAACGAAAACAAACAACGCGCACTTTCAGCAGCACTAAGTCAAATCGAAAAACAATTTGGTAAAGGTTCTATTATGCG
TTTAGGTGATACCCAAACGTTAGATGTTGATGCAGTTTCTACAGGTTCATTAGGGCTTGATATTGCATTAGGGATTGGTG
GTTTACCAATGGGGCGAATTGTTGAAATTTTTGGACCAGAATCTTCTGGTAAAACAACGCTTACATTATCAGTTATTGCA
CAAGCACAAAAAGAAGGTAAAACCTGTGCATTTATTGATGCTGAACACGCTTTAGATCCAATTTATGCTGCAAAATTAGG
GGTACAAGTTGATGACTTATTAGTTTCACAACCCGACACAGGTGAACAAGCACTTGAAATCTGTGATGCACTTGTTCGTT
CAGGCGCAGTTGATGTGATTATCGTTGACTCGGTTGCGGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGCGAT
TCTCACATGGGATTACAAGCTCGTTTAATGTCTCAAGCACTGCGAAAATTAACTGCAAATATCAAAAATGCTAATTGTTT
AGTGGTATTTATTAACCAAATTCGGATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACTGGTGGTAACGCAC
TTAAATTTTATGCTTCTGTTCGTTTAGATATTCGTCGTACTGGTGCAGTTAAAGAAGGCGAAGATGTTATTGGTAGTGAT
ACTCGCGTTAAAGTGGTTAAAAATAAAGTTGCTGCACCATTTAGACAGGCTGAATTTCAAATTTTATATGGTTGTGGTAT
CTCTAAAGATGGTGAACTCATTGATTTGGGGGTAAAACATAAATTAGTTGATAAAGCAGGAGCATGGTATAGCTACAACG
GTGAAAAAGTGGGTCAAGGTAAAGCTAACTCAATTAAATTTTTACAAGAACACCCTGAAATTGCGAATGAGCTTGAAACA
AAATTACGCGAACTATTATTAAATAGCCCTGCTGTTTTTTCTGATGAAGACACATCACCAGAAGATGAAAGTTTTGAGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.301

100

0.763
  recA Vibrio cholerae strain A1552

79.878

94.798

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.878

94.798

0.757
  recA Glaesserella parasuis strain SC1401

73.851

100

0.743
  recA Acinetobacter baylyi ADP1

71.965

100

0.72
  recA Acinetobacter baumannii D1279779

73.556

95.087

0.699
  recA Neisseria gonorrhoeae MS11

71.472

94.22

0.673
  recA Neisseria gonorrhoeae MS11

71.472

94.22

0.673
  recA Neisseria gonorrhoeae strain FA1090

71.472

94.22

0.673
  recA Ralstonia pseudosolanacearum GMI1000

73.333

91.04

0.668
  recA Helicobacter pylori strain NCTC11637

61.207

100

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.458

92.197

0.613
  recA Helicobacter pylori 26695

60.632

100

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

92.775

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.631

95.665

0.59
  recA Streptococcus pneumoniae R6

60.991

93.353

0.569
  recA Streptococcus pneumoniae TIGR4

60.991

93.353

0.569
  recA Streptococcus pneumoniae Rx1

60.991

93.353

0.569
  recA Streptococcus pneumoniae D39

60.991

93.353

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.775

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.775

0.566
  recA Streptococcus mitis NCTC 12261

60.062

93.353

0.561
  recA Streptococcus mutans UA159

59.385

93.931

0.558
  recA Streptococcus mitis SK321

59.752

93.353

0.558
  recA Streptococcus pyogenes NZ131

59.021

94.509

0.558
  recA Lactococcus lactis subsp. cremoris KW2

57.276

93.353

0.535

Multiple sequence alignment