Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYM76_RS07805 Genome accession   NZ_CP048263
Coordinates   1711622..1712668 (+) Length   348 a.a.
NCBI ID   WP_220225104.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0443     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706622..1717668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM76_RS07790 (GYM76_07790) - 1707733..1708311 (-) 579 WP_220225102.1 membrane integrity-associated transporter subunit PqiC -
  GYM76_RS07795 (GYM76_07795) pqiB 1708311..1709948 (-) 1638 WP_220225103.1 intermembrane transport protein PqiB -
  GYM76_RS07800 (GYM76_07800) - 1709964..1711202 (-) 1239 WP_065562293.1 PqiA/YebS family transporter subunit -
  GYM76_RS07805 (GYM76_07805) recA 1711622..1712668 (+) 1047 WP_220225104.1 recombinase RecA Machinery gene
  GYM76_RS07810 (GYM76_07810) - 1712668..1713168 (+) 501 WP_220225105.1 regulatory protein RecX -
  GYM76_RS07815 (GYM76_07815) alaS 1713365..1715998 (+) 2634 WP_220225106.1 alanine--tRNA ligase -
  GYM76_RS07820 (GYM76_07820) csrA 1716138..1716338 (+) 201 WP_065562297.1 carbon storage regulator CsrA -
  GYM76_RS07845 (GYM76_07845) - 1717343..1717615 (-) 273 WP_065734217.1 DUF4190 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37253.56 Da        Isoelectric Point: 4.8545

>NTDB_id=420278 GYM76_RS07805 WP_220225104.1 1711622..1712668(+) (recA) [Gilliamella sp. ESL0443]
MNENKQRALSAALSQIEKQFGKGSIMRLGDTQTLDVDAVSTGSLGLDIALGIGGLPMGRIVEIFGPESSGKTTLTLSVIA
QAQKEGKTCAFIDAEHALDPIYAAKLGVQVDDLLVSQPDTGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKLTANIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEDVIGSD
TRVKVVKNKVAAPFRQAEFQILYGCGISKEGELIDLGVKHKLVDKAGAWYSYNGEKVGQGKANSIKFLQEHPEIAKELET
KLRDLLLNSPAVFSADDEGVSADDESFE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=420278 GYM76_RS07805 WP_220225104.1 1711622..1712668(+) (recA) [Gilliamella sp. ESL0443]
ATGAATGAAAACAAACAACGTGCACTTTCTGCAGCATTAAGCCAAATCGAGAAACAATTTGGTAAAGGTTCAATAATGCG
TTTAGGTGATACTCAGACACTAGACGTAGATGCGGTTTCAACAGGTTCTTTAGGGTTAGATATTGCATTAGGTATCGGCG
GCTTGCCAATGGGAAGAATTGTTGAAATTTTTGGGCCGGAGTCATCAGGGAAAACAACATTAACATTATCTGTTATTGCT
CAAGCACAAAAAGAAGGTAAAACCTGTGCATTTATCGATGCTGAACATGCTTTAGATCCTATCTATGCAGCTAAGTTAGG
TGTTCAAGTCGATGATTTATTAGTTTCTCAACCTGATACAGGAGAGCAAGCTCTTGAAATTTGTGATGCATTAGTTCGTT
CTGGTGCAGTTGATGTGATTATTGTGGACTCGGTTGCAGCATTAACACCAAAAGCAGAAATTGAAGGTGAAATGGGCGAT
TCTCACATGGGGTTACAAGCACGCTTAATGTCTCAAGCATTACGTAAATTAACCGCTAATATCAAAAATGCAAATTGTCT
TGTCGTTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGAAATCCAGAAACCACTACCGGTGGTAATGCCT
TAAAATTCTATGCATCTGTTCGTTTAGATATTCGTCGTACTGGTGCGGTAAAAGAAGGCGAAGATGTTATTGGTAGTGAT
ACGCGTGTAAAAGTAGTTAAAAATAAAGTAGCTGCGCCGTTTAGACAAGCTGAATTCCAAATCCTTTATGGATGTGGTAT
CTCTAAAGAAGGTGAATTGATTGATTTAGGTGTTAAACATAAATTAGTCGATAAGGCTGGAGCTTGGTATAGCTACAACG
GTGAGAAAGTAGGTCAAGGTAAAGCAAATTCAATTAAGTTTTTACAAGAACATCCTGAAATTGCCAAAGAACTTGAAACT
AAATTACGCGATTTATTGTTAAACAGTCCTGCTGTTTTCTCTGCTGATGATGAAGGCGTTTCGGCAGATGATGAAAGCTT
TGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.945

99.713

0.767
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.945

99.713

0.767
  recA Pseudomonas stutzeri DSM 10701

77.126

97.989

0.756
  recA Glaesserella parasuis strain SC1401

73.851

100

0.739
  recA Acinetobacter baylyi ADP1

71.839

100

0.718
  recA Acinetobacter baumannii D1279779

73.252

94.54

0.693
  recA Neisseria gonorrhoeae MS11

71.779

93.678

0.672
  recA Neisseria gonorrhoeae MS11

71.779

93.678

0.672
  recA Neisseria gonorrhoeae strain FA1090

71.779

93.678

0.672
  recA Ralstonia pseudosolanacearum GMI1000

73.333

90.517

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.93

97.989

0.626
  recA Helicobacter pylori strain NCTC11637

61.652

97.414

0.601
  recA Helicobacter pylori 26695

61.062

97.414

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

92.241

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.115

0.583
  recA Streptococcus pneumoniae R6

60.991

92.816

0.566
  recA Streptococcus pneumoniae Rx1

60.991

92.816

0.566
  recA Streptococcus pneumoniae D39

60.991

92.816

0.566
  recA Streptococcus pneumoniae TIGR4

60.991

92.816

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.241

0.563
  recA Streptococcus mitis NCTC 12261

60.062

92.816

0.557
  recA Streptococcus mutans UA159

59.385

93.391

0.555
  recA Streptococcus pyogenes NZ131

59.385

93.391

0.555
  recA Streptococcus mitis SK321

59.752

92.816

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.276

92.816

0.532

Multiple sequence alignment