Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   IBL27_RS07435 Genome accession   NZ_CP061071
Coordinates   1518688..1519353 (-) Length   221 a.a.
NCBI ID   WP_024784388.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513688..1524353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS07415 (IBL27_07415) - 1514408..1515043 (+) 636 WP_002300278.1 hypothetical protein -
  IBL27_RS07420 (IBL27_07420) - 1515123..1516823 (-) 1701 WP_002308502.1 zinc ribbon domain-containing protein -
  IBL27_RS07425 (IBL27_07425) - 1516843..1517937 (-) 1095 WP_002308500.1 hypothetical protein -
  IBL27_RS07430 (IBL27_07430) hpf 1518061..1518609 (-) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IBL27_RS07435 (IBL27_07435) comFC/cflB 1518688..1519353 (-) 666 WP_024784388.1 ComF family protein Machinery gene
  IBL27_RS07440 (IBL27_07440) comFA/cflA 1519350..1520651 (-) 1302 WP_019806030.1 DEAD/DEAH box helicase Machinery gene
  IBL27_RS07445 (IBL27_07445) - 1520724..1521353 (+) 630 WP_002267042.1 YigZ family protein -
  IBL27_RS07450 (IBL27_07450) cysK 1521444..1522370 (+) 927 WP_002269524.1 cysteine synthase A -
  IBL27_RS07455 (IBL27_07455) - 1522706..1523797 (-) 1092 WP_002263029.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26030.09 Da        Isoelectric Point: 9.1277

>NTDB_id=419822 IBL27_RS07435 WP_024784388.1 1518688..1519353(-) (comFC/cflB) [Streptococcus mutans B04Sm5]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKENGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=419822 IBL27_RS07435 WP_024784388.1 1518688..1519353(-) (comFC/cflB) [Streptococcus mutans B04Sm5]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAAATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439

Multiple sequence alignment