Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GSQ66_RS11745 Genome accession   NZ_CP048106
Coordinates   2748147..2749196 (+) Length   349 a.a.
NCBI ID   WP_162427652.1    Uniprot ID   -
Organism   Pontibacter pudoricolor strain BT214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743147..2754196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSQ66_RS11725 - 2744521..2745486 (+) 966 WP_162427648.1 MoxR family ATPase -
  GSQ66_RS11730 - 2745629..2746057 (+) 429 WP_162427649.1 hypothetical protein -
  GSQ66_RS11735 - 2746135..2746998 (-) 864 WP_162427650.1 SDR family NAD(P)-dependent oxidoreductase -
  GSQ66_RS11740 - 2747159..2747791 (+) 633 WP_162427651.1 GNAT family N-acetyltransferase -
  GSQ66_RS11745 recA 2748147..2749196 (+) 1050 WP_162427652.1 recombinase RecA Machinery gene
  GSQ66_RS11750 - 2749445..2750275 (+) 831 WP_238395658.1 DUF3108 domain-containing protein -
  GSQ66_RS11755 - 2750479..2751168 (+) 690 WP_162427653.1 response regulator transcription factor -
  GSQ66_RS11760 - 2751174..2752208 (+) 1035 WP_162427654.1 cell wall metabolism sensor histidine kinase WalK -
  GSQ66_RS11765 - 2752363..2753073 (+) 711 WP_162427655.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37641.26 Da        Isoelectric Point: 5.0759

>NTDB_id=419822 GSQ66_RS11745 WP_162427652.1 2748147..2749196(+) (recA) [Pontibacter pudoricolor strain BT214]
MSVSNEKLKALQLTIDKLDKTYGKGTVMKLSDNKVEDIPAISTGSLGLDIALGIGGLPRGRVIEIYGPESSGKTTLTMHA
IAEAQKAGGLAAFIDAEHAFDKAYAEKLGIDTENLLISQPDNGEQALEIADHLIRSGAIDIIVIDSVAALVPKGELEGDM
GDSKMGLQARLMSQALRKLTGTINKTGCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRIGQIKEAADNIT
GNRTRVKVVKNKVAPPFKVVEFDIMYGEGISKVGEILDLGVELNIVQKSGSWFSYDGNKLGQGRDGVKQILLDNPELMDE
IEQKIRAIVKGEPEKVAEVLEDKSADRGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=419822 GSQ66_RS11745 WP_162427652.1 2748147..2749196(+) (recA) [Pontibacter pudoricolor strain BT214]
ATGAGTGTAAGCAACGAAAAACTTAAAGCCCTGCAGCTGACCATCGACAAGCTCGACAAGACTTACGGTAAAGGCACTGT
AATGAAGCTTAGCGACAACAAAGTAGAAGACATTCCTGCTATCTCTACAGGGTCTCTTGGGTTGGACATAGCTTTGGGTA
TTGGCGGTTTGCCACGTGGCCGTGTAATTGAGATCTACGGTCCTGAATCTTCTGGTAAAACCACGCTTACTATGCACGCT
ATTGCCGAAGCTCAGAAAGCAGGTGGCCTGGCAGCATTTATTGACGCAGAGCACGCTTTTGATAAAGCATATGCCGAGAA
ACTCGGAATTGATACAGAAAACTTATTGATATCGCAGCCGGATAACGGTGAGCAGGCACTTGAGATCGCTGATCATCTGA
TCCGTTCTGGCGCTATTGATATTATCGTAATTGACTCAGTGGCTGCCCTGGTACCAAAAGGTGAACTGGAAGGCGACATG
GGTGACAGCAAAATGGGTCTTCAGGCTCGTTTAATGTCTCAGGCACTTCGTAAGCTGACAGGTACGATCAACAAAACAGG
ATGCTGCTGTATCTTTATCAACCAGCTTCGTGAGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACAACCGGTGGTA
ACGCCCTTAAATTCTACGCATCCGTACGTCTGGATATTCGTCGTATTGGTCAGATTAAAGAGGCTGCCGATAACATTACA
GGTAACCGTACCCGCGTGAAAGTTGTGAAGAACAAAGTAGCGCCTCCGTTTAAAGTGGTAGAATTCGACATCATGTATGG
CGAGGGTATCTCTAAAGTAGGTGAGATCCTTGACCTTGGCGTGGAGCTGAACATAGTGCAGAAATCCGGTTCATGGTTCT
CTTATGATGGCAACAAGCTGGGCCAGGGCCGCGATGGCGTGAAGCAGATCCTGCTTGACAACCCTGAACTGATGGATGAG
ATCGAGCAGAAGATCAGAGCCATTGTAAAGGGTGAGCCTGAAAAAGTAGCTGAAGTTTTAGAAGATAAATCAGCCGACAG
AGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.727

94.556

0.688
  recA Ralstonia pseudosolanacearum GMI1000

67.692

93.123

0.63
  recA Acinetobacter baylyi ADP1

66.667

92.837

0.619
  recA Acinetobacter baumannii D1279779

67.188

91.691

0.616
  recA Glaesserella parasuis strain SC1401

62.209

98.567

0.613
  recA Neisseria gonorrhoeae MS11

64.526

93.696

0.605
  recA Neisseria gonorrhoeae MS11

64.526

93.696

0.605
  recA Neisseria gonorrhoeae strain FA1090

64.526

93.696

0.605
  recA Helicobacter pylori strain NCTC11637

64.526

93.696

0.605
  recA Pseudomonas stutzeri DSM 10701

62.426

96.848

0.605
  recA Helicobacter pylori 26695

64.22

93.696

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.596

92.264

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

93.123

0.593
  recA Vibrio cholerae strain A1552

60.177

97.135

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.177

97.135

0.585
  recA Streptococcus mitis NCTC 12261

58.092

99.14

0.576
  recA Streptococcus pyogenes NZ131

60.923

93.123

0.567
  recA Streptococcus mitis SK321

59.877

92.837

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.55

0.556
  recA Streptococcus mutans UA159

59.385

93.123

0.553
  recA Streptococcus pneumoniae Rx1

59.385

93.123

0.553
  recA Streptococcus pneumoniae D39

59.385

93.123

0.553
  recA Streptococcus pneumoniae R6

59.385

93.123

0.553
  recA Streptococcus pneumoniae TIGR4

59.385

93.123

0.553
  recA Lactococcus lactis subsp. cremoris KW2

59.077

93.123

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.657

93.696

0.521

Multiple sequence alignment