Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GWK91_RS04845 Genome accession   NZ_CP048021
Coordinates   943781..944830 (+) Length   349 a.a.
NCBI ID   WP_044157495.1    Uniprot ID   A0A6B9YCQ5
Organism   Virgibacillus sp. MSP4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938781..949830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK91_RS04820 (GWK91_04815) - 939387..939644 (+) 258 WP_044157489.1 DUF3243 domain-containing protein -
  GWK91_RS04825 (GWK91_04820) - 939927..940721 (+) 795 WP_044157490.1 DUF3388 domain-containing protein -
  GWK91_RS04830 (GWK91_04825) - 940741..941685 (+) 945 WP_044157493.1 helix-turn-helix domain-containing protein -
  GWK91_RS04835 (GWK91_04830) pgsA 941758..942336 (+) 579 WP_044157494.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GWK91_RS04840 (GWK91_04835) - 942333..943595 (+) 1263 WP_162038794.1 competence/damage-inducible protein A -
  GWK91_RS04845 (GWK91_04840) recA 943781..944830 (+) 1050 WP_044157495.1 recombinase RecA Machinery gene
  GWK91_RS04850 (GWK91_04845) rny 945051..946616 (+) 1566 WP_044157497.1 ribonuclease Y -
  GWK91_RS04855 (GWK91_04850) - 946725..947522 (+) 798 WP_044157498.1 TIGR00282 family metallophosphoesterase -
  GWK91_RS04860 (GWK91_04855) spoVS 947700..947960 (+) 261 WP_044157499.1 stage V sporulation protein SpoVS -
  GWK91_RS04865 (GWK91_04860) - 948036..948956 (+) 921 WP_044157501.1 dipeptidase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37869.88 Da        Isoelectric Point: 4.9432

>NTDB_id=419491 GWK91_RS04845 WP_044157495.1 943781..944830(+) (recA) [Virgibacillus sp. MSP4-1]
MSERKQALDMALKQIEKQFGKGSIMKLGEQEGQKVSTVSSGSITLDVALGVGGYPRGRVVEIYGPESSGKTTVALHAIAE
AQRNGGQAAFIDAEHALDPVYARKLGVNIEELLLSQPDTGEQALEIAEALVRSGAIDMIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEILDIGADLDIIQKSGAWYSYNNEKMGQGRENAKKFLSENEDIAEEVKSA
IRKHHNLDEDDGDEGKEVNNDEAQEMLDV

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=419491 GWK91_RS04845 WP_044157495.1 943781..944830(+) (recA) [Virgibacillus sp. MSP4-1]
GTGAGCGAACGTAAGCAGGCGCTTGATATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGCTCCATTATGAAACT
TGGGGAACAGGAAGGACAAAAAGTTTCAACGGTTTCAAGTGGATCTATTACACTTGATGTTGCATTAGGTGTTGGTGGGT
ACCCACGAGGACGTGTGGTGGAAATTTATGGTCCTGAATCCTCTGGTAAAACAACCGTAGCTTTACATGCGATCGCAGAG
GCACAGCGTAATGGAGGTCAAGCCGCTTTTATTGATGCAGAGCATGCACTGGATCCTGTCTATGCTAGAAAATTAGGCGT
AAATATTGAAGAACTATTATTATCACAGCCTGACACTGGTGAGCAGGCATTGGAAATTGCGGAAGCACTTGTGCGAAGTG
GAGCTATTGACATGATTGTTGTTGACTCTGTTGCAGCCCTTGTACCTAAAGCAGAAATTGAAGGGGAAATGGGGGACTCC
CACGTTGGTTTACAGGCACGTTTAATGTCTCAGGCCCTGCGTAAATTATCAGGTGCCATCAATAAATCGAAAACAACGGC
TATTTTTATTAATCAGATTCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCGGAAACCACTCCAGGTGGACGTGCACTGA
AATTCTATTCGTCTGTTCGTCTGGAAGTCCGCAGAGCCGAAACCTTAAAACAGGGAAATGAAATGGTTGGTAACAAAACC
AAGATTAAGGTTGTTAAAAACAAGGTTGCCCCACCATTTAGAACAGCCGAGGTTGATATTATGTATGGAGAAGGTATCTC
TAAAGAAGGCGAGATTCTTGATATTGGAGCCGACCTAGATATCATCCAGAAGAGTGGAGCCTGGTATTCCTATAATAATG
AAAAAATGGGTCAGGGAAGAGAAAATGCGAAGAAATTCCTGAGTGAGAATGAAGATATAGCTGAAGAAGTAAAAAGTGCA
ATCAGAAAGCATCATAATCTTGATGAAGATGATGGAGACGAAGGTAAGGAAGTAAATAATGATGAAGCCCAGGAAATGTT
AGATGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B9YCQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.333

94.556

0.788
  recA Latilactobacillus sakei subsp. sakei 23K

73.089

93.696

0.685
  recA Streptococcus mitis NCTC 12261

68.195

100

0.682
  recA Streptococcus mitis SK321

67.622

100

0.676
  recA Streptococcus mutans UA159

69.027

97.135

0.67
  recA Streptococcus pneumoniae R6

70

94.556

0.662
  recA Streptococcus pneumoniae Rx1

70

94.556

0.662
  recA Streptococcus pneumoniae D39

70

94.556

0.662
  recA Streptococcus pneumoniae TIGR4

70

94.556

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.568

95.415

0.645
  recA Streptococcus pyogenes NZ131

69.444

92.837

0.645
  recA Neisseria gonorrhoeae strain FA1090

65.868

95.702

0.63
  recA Neisseria gonorrhoeae MS11

65.868

95.702

0.63
  recA Neisseria gonorrhoeae MS11

65.868

95.702

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.049

92.837

0.613
  recA Vibrio cholerae strain A1552

66.049

92.837

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.463

97.708

0.61
  recA Ralstonia pseudosolanacearum GMI1000

68.387

88.825

0.607
  recA Glaesserella parasuis strain SC1401

65.938

91.691

0.605
  recA Acinetobacter baumannii D1279779

64.615

93.123

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

93.41

0.593
  recA Acinetobacter baylyi ADP1

64.174

91.977

0.59
  recA Pseudomonas stutzeri DSM 10701

64.263

91.404

0.587
  recA Helicobacter pylori strain NCTC11637

63.551

91.977

0.585
  recA Helicobacter pylori 26695

63.551

91.977

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

93.123

0.576

Multiple sequence alignment