Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CFU_RS19845 Genome accession   NC_015856
Coordinates   4477658..4478767 (-) Length   369 a.a.
NCBI ID   WP_014007780.1    Uniprot ID   G0AFX8
Organism   Collimonas fungivorans Ter331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4472658..4483767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS19820 (CFU_3799) - 4473056..4473832 (-) 777 WP_041742512.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  CFU_RS19825 (CFU_3800) sucD 4474076..4474957 (-) 882 WP_014007776.1 succinate--CoA ligase subunit alpha -
  CFU_RS19830 (CFU_3801) sucC 4474978..4476174 (-) 1197 WP_274377036.1 ADP-forming succinate--CoA ligase subunit beta -
  CFU_RS19835 (CFU_3802) - 4476247..4476855 (-) 609 WP_014007778.1 DUF2889 domain-containing protein -
  CFU_RS19840 (CFU_3803) recX 4477061..4477531 (-) 471 WP_014007779.1 recombination regulator RecX -
  CFU_RS19845 (CFU_3804) recA 4477658..4478767 (-) 1110 WP_014007780.1 recombinase RecA Machinery gene
  CFU_RS25305 - 4478864..4479220 (+) 357 WP_238531352.1 hypothetical protein -
  CFU_RS19850 (CFU_3805) ggt 4479217..4480968 (+) 1752 WP_238531512.1 gamma-glutamyltransferase -
  CFU_RS19855 (CFU_3806) - 4481277..4482314 (+) 1038 WP_014007782.1 DUF1338 domain-containing protein -
  CFU_RS19860 (CFU_3807) - 4482323..4483741 (+) 1419 WP_014007783.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39167.67 Da        Isoelectric Point: 5.3869

>NTDB_id=41948 CFU_RS19845 WP_014007780.1 4477658..4478767(-) (recA) [Collimonas fungivorans Ter331]
MDDKKSAPNPDKSKALAAALAQIEKQFGKGSVMRMEDGAVVEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGINLSELLISQPDTGEQALEITDALVRSGGVDLIVVDSVAALTPRA
EIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKS
GDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEILDLGSDAKIVEKSGAWYSYNGERIGQGKDNARTYLKERP
ELAREIENKVRASLGVPLLGEIKSDGGDKAAEKAAAKASKAAAKAEEPV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=41948 CFU_RS19845 WP_014007780.1 4477658..4478767(-) (recA) [Collimonas fungivorans Ter331]
ATGGACGATAAAAAATCCGCACCCAATCCGGATAAAAGCAAGGCCCTTGCCGCGGCCTTGGCGCAGATCGAAAAACAATT
CGGCAAAGGTTCGGTCATGCGCATGGAAGACGGCGCCGTGGTCGAAGAAGTGCAGGTTGTCTCGACCGGTTCGCTCGGCC
TGGACATCGCGCTGGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGTCCGGAATCTTCCGGTAAAACC
ACGCTGACCCTGCAAACCATCGCCGAAATGCAGAAGCTGGGCGGCACTTGCGCGTTCATCGATGCGGAACATGCGCTGGA
CGTCGGTTATGCGCAGAAGCTGGGCATCAACCTGTCCGAGCTGCTGATTTCGCAGCCGGACACCGGCGAACAGGCGCTGG
AAATCACCGATGCGCTGGTGCGCTCGGGCGGCGTCGACCTGATCGTGGTCGACTCGGTGGCGGCGCTGACGCCGCGCGCC
GAAATCGAAGGCGACATGGGCGATTCCCTGCCTGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGG
CAGCATCAACCGCACCAACACGCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAATCCGG
AAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCTTCGGTGCGGCTGGATATCCGCCGCACCGGTTCGATCAAGTCG
GGCGATGAGGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCGTTCAAGGAAGCGCATTT
CGACATCCTGTATGGCGAAGGCACATCGCGCGAAGGTGAAATCCTCGATCTCGGCTCCGACGCCAAGATCGTTGAAAAAT
CGGGCGCCTGGTACAGCTACAACGGCGAACGTATCGGCCAGGGTAAGGACAATGCCCGTACCTACCTGAAAGAACGGCCG
GAACTGGCGCGTGAAATCGAAAACAAGGTGCGTGCTTCGCTGGGTGTGCCGCTACTGGGCGAGATCAAGTCGGACGGCGG
CGACAAGGCGGCGGAAAAAGCCGCTGCCAAGGCAAGCAAGGCTGCTGCCAAGGCTGAAGAGCCGGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0AFX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.438

86.721

0.724
  recA Neisseria gonorrhoeae MS11

73.476

88.889

0.653
  recA Neisseria gonorrhoeae MS11

73.476

88.889

0.653
  recA Neisseria gonorrhoeae strain FA1090

73.476

88.889

0.653
  recA Vibrio cholerae strain A1552

70.468

92.683

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.468

92.683

0.653
  recA Glaesserella parasuis strain SC1401

69.298

92.683

0.642
  recA Acinetobacter baylyi ADP1

70.659

90.515

0.64
  recA Pseudomonas stutzeri DSM 10701

72.222

87.805

0.634
  recA Acinetobacter baumannii D1279779

71.166

88.347

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.964

90.515

0.615
  recA Streptococcus mutans UA159

59.834

97.832

0.585
  recA Streptococcus mitis NCTC 12261

61.561

93.767

0.577
  recA Helicobacter pylori 26695

64.545

89.431

0.577
  recA Helicobacter pylori strain NCTC11637

64.242

89.431

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

89.16

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

88.347

0.572
  recA Streptococcus pyogenes NZ131

63.83

89.16

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.763

90.244

0.566
  recA Streptococcus pneumoniae R6

63.333

89.431

0.566
  recA Streptococcus pneumoniae Rx1

63.333

89.431

0.566
  recA Streptococcus pneumoniae D39

63.333

89.431

0.566
  recA Streptococcus pneumoniae TIGR4

63.333

89.431

0.566
  recA Streptococcus mitis SK321

63.03

89.431

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

63.19

88.347

0.558
  recA Lactococcus lactis subsp. cremoris KW2

60.294

92.141

0.556

Multiple sequence alignment