Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATC_RS08380 Genome accession   NC_015850
Coordinates   1733292..1734335 (-) Length   347 a.a.
NCBI ID   WP_004872284.1    Uniprot ID   A0A1E7YJF7
Organism   Acidithiobacillus caldus SM-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728292..1739335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC_RS08360 (Atc_1681) - 1728813..1729505 (-) 693 WP_004872276.1 anti-sigma factor -
  ATC_RS08365 (Atc_1682) - 1729492..1730052 (-) 561 WP_004872277.1 sigma-70 family RNA polymerase sigma factor -
  ATC_RS08370 (Atc_1683) alaS 1730140..1732782 (-) 2643 WP_004872279.1 alanine--tRNA ligase -
  ATC_RS08375 (Atc_1684) - 1732813..1733295 (-) 483 WP_014002992.1 regulatory protein RecX -
  ATC_RS08380 (Atc_1685) recA 1733292..1734335 (-) 1044 WP_004872284.1 recombinase RecA Machinery gene
  ATC_RS08385 (Atc_1686) - 1734473..1735294 (-) 822 WP_226047624.1 CinA family protein -
  ATC_RS08390 (Atc_1687) thiL 1735284..1736297 (-) 1014 WP_004872288.1 thiamine-phosphate kinase -
  ATC_RS08395 (Atc_1688) gluQRS 1736438..1737286 (+) 849 WP_014002993.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  ATC_RS08400 (Atc_1689) - 1737392..1738177 (+) 786 WP_014002994.1 MBL fold metallo-hydrolase -
  ATC_RS08405 (Atc_1690) - 1738208..1738558 (+) 351 WP_004872295.1 hypothetical protein -
  ATC_RS08410 (Atc_1691) sfsA 1738603..1739301 (+) 699 WP_014002995.1 DNA/RNA nuclease SfsA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37216.47 Da        Isoelectric Point: 5.7755

>NTDB_id=41926 ATC_RS08380 WP_004872284.1 1733292..1734335(-) (recA) [Acidithiobacillus caldus SM-1]
MDEHRSKALAAALSQIDKQFGKGAIMRLGEQSAVKDIQVYSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLTLHAI
ASCQASGGTAAFIDAEHALDPSYAQKLGVDLENLLISQPDTGEQALEIADMLVRSGAVDLIVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTANISRTNTLVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIGTIKKGDEILGS
DTRVKVVKNKVAPPFREAEFAIYYGEGISRLSELVDLGVKFDIIEKSGAWYSYKGERIGQGKDNARQFLKERPEMAKEIE
ERVRAAANGHPLAFAEEGPVVAAEAGD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=41926 ATC_RS08380 WP_004872284.1 1733292..1734335(-) (recA) [Acidithiobacillus caldus SM-1]
ATGGATGAACATCGCAGCAAGGCCCTGGCCGCCGCCCTGTCACAGATCGATAAACAGTTTGGCAAGGGTGCGATCATGCG
CCTGGGGGAGCAGAGCGCCGTCAAGGATATCCAGGTGTACTCCACGGGTTCCCTGGGACTCGACCTGGCGCTAGGGGTCG
GTGGCCTGCCGCGCGGACGCGTGGTGGAGATTTACGGTCCCGAATCCTCGGGTAAGACCACCCTCACCCTGCACGCCATT
GCCAGTTGCCAAGCCAGTGGTGGCACGGCAGCCTTCATCGATGCCGAACACGCCCTGGACCCAAGCTATGCCCAGAAGTT
GGGGGTGGATCTCGAAAATCTCCTGATCTCCCAGCCCGACACCGGTGAACAGGCATTGGAAATCGCCGATATGCTGGTGC
GCTCCGGGGCCGTCGACCTCATCGTCGTGGATTCCGTGGCAGCCTTGACGCCCAAGGCCGAGATCGAGGGGGAAATGGGC
GACTCCCACGTCGGTCTACAGGCACGCCTCATGAGCCAGGCCTTGCGCAAACTCACGGCCAATATCTCCCGTACCAATAC
CCTGGTCATCTTCATCAATCAGATCCGCATGAAGATCGGAGTGATGTACGGCAGTCCGGAAACTACCACCGGTGGTAATG
CCCTCAAGTTCTACGCTTCAGTGCGCCTGGATATCCGCCGTATCGGTACCATCAAGAAAGGGGATGAGATCCTGGGCAGC
GACACGCGGGTGAAGGTGGTAAAAAACAAGGTGGCGCCGCCCTTTCGCGAGGCCGAGTTCGCCATTTATTATGGCGAGGG
GATCTCGCGCCTGTCGGAGTTGGTGGATCTCGGTGTCAAGTTCGATATCATCGAGAAAAGTGGCGCCTGGTATAGCTACA
AGGGTGAGCGGATTGGGCAGGGCAAGGACAACGCGCGCCAATTCCTCAAGGAACGGCCCGAGATGGCCAAGGAAATCGAA
GAGCGGGTTCGCGCTGCCGCCAACGGTCACCCCCTGGCCTTTGCCGAGGAAGGACCCGTCGTCGCTGCCGAGGCGGGCGA
TTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7YJF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

72.321

96.83

0.7
  recA Neisseria gonorrhoeae strain FA1090

72.321

96.83

0.7
  recA Neisseria gonorrhoeae MS11

72.321

96.83

0.7
  recA Ralstonia pseudosolanacearum GMI1000

74.462

93.66

0.697
  recA Acinetobacter baylyi ADP1

74.074

93.372

0.692
  recA Acinetobacter baumannii D1279779

74.074

93.372

0.692
  recA Pseudomonas stutzeri DSM 10701

73.231

93.66

0.686
  recA Glaesserella parasuis strain SC1401

71.733

94.813

0.68
  recA Vibrio cholerae strain A1552

70.679

93.372

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.679

93.372

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.077

93.66

0.628
  recA Helicobacter pylori strain NCTC11637

66.154

93.66

0.62
  recA Helicobacter pylori 26695

66.154

93.66

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.244

94.524

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

92.219

0.617
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.538

93.66

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

64.198

93.372

0.599
  recA Streptococcus pneumoniae Rx1

63.804

93.948

0.599
  recA Streptococcus pneumoniae D39

63.804

93.948

0.599
  recA Streptococcus pneumoniae R6

63.804

93.948

0.599
  recA Streptococcus pneumoniae TIGR4

63.804

93.948

0.599
  recA Streptococcus mutans UA159

63.497

93.948

0.597
  recA Streptococcus mitis NCTC 12261

63.385

93.66

0.594
  recA Streptococcus mitis SK321

63.385

93.66

0.594
  recA Streptococcus pyogenes NZ131

62.883

93.948

0.591
  recA Lactococcus lactis subsp. cremoris KW2

61.162

94.236

0.576

Multiple sequence alignment