Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynMINOS11_RS10600 Genome accession   NZ_CP047953
Coordinates   1872177..1873298 (-) Length   373 a.a.
NCBI ID   WP_011936525.1    Uniprot ID   -
Organism   Synechococcus sp. Minos11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867177..1878298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynMINOS11_RS10575 (SynMINOS11_02272) crtD 1867663..1869147 (+) 1485 WP_186548435.1 C-3',4' desaturase CrtD -
  SynMINOS11_RS10580 (SynMINOS11_02273) - 1869120..1869986 (-) 867 WP_186548437.1 prephenate/arogenate dehydrogenase -
  SynMINOS11_RS10585 (SynMINOS11_02274) - 1870043..1871488 (+) 1446 WP_186548439.1 helicase -
  SynMINOS11_RS10590 (SynMINOS11_02275) - 1871498..1871740 (+) 243 WP_011936523.1 DUF2839 domain-containing protein -
  SynMINOS11_RS10595 (SynMINOS11_02276) - 1871842..1872171 (+) 330 WP_011936524.1 DUF1815 family protein -
  SynMINOS11_RS10600 (SynMINOS11_02277) recA 1872177..1873298 (-) 1122 WP_011936525.1 recombinase RecA Machinery gene
  SynMINOS11_RS10605 (SynMINOS11_02278) - 1873425..1874195 (-) 771 WP_255445400.1 HAD family hydrolase -
  SynMINOS11_RS10615 (SynMINOS11_02280) - 1874345..1875757 (-) 1413 WP_186548440.1 AAA family ATPase -
  SynMINOS11_RS10620 (SynMINOS11_02281) - 1875787..1876809 (-) 1023 WP_186548442.1 LdpA C-terminal domain-containing domain -
  SynMINOS11_RS10625 (SynMINOS11_02282) - 1876799..1877260 (-) 462 WP_186548444.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynMINOS11_RS10630 (SynMINOS11_02283) rplC 1877614..1878261 (+) 648 WP_011936530.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39746.43 Da        Isoelectric Point: 6.5176

>NTDB_id=418718 SynMINOS11_RS10600 WP_011936525.1 1872177..1873298(-) (recA) [Synechococcus sp. Minos11]
MADPKSNQAPAAEREKALGLVLNQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPESSGKT
TLTLHAIAEVQRSGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAALTPRA
EIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
ATEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYNGDNVGQGRDNTITWLEQNP
EACQEIEQLTRQKLTAGADVTANSMKPLAAVGAKRKEGAERPAEAPKPLAEAS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=418718 SynMINOS11_RS10600 WP_011936525.1 1872177..1873298(-) (recA) [Synechococcus sp. Minos11]
ATGGCCGATCCCAAGTCCAACCAAGCTCCCGCTGCTGAGCGTGAAAAGGCCCTGGGTCTGGTGCTGAATCAGATCGAGCG
CAACTTCGGTAAGGGTTCGATCATGCGTTTGGGGGATGCCTCCCGTATGCGGGTTGAAACCATCTCCACCGGTGCGCTCA
CCTTGGATCTCGCCCTGGGCGGTGGTTACCCCAAAGGCCGTGTCGTTGAGATTTACGGCCCGGAAAGCTCCGGTAAAACC
ACCCTCACCCTGCATGCCATTGCTGAAGTGCAAAGGAGTGGTGGCGTGGCGGCCTTTGTGGATGCTGAGCACGCGCTCGA
TCCTGTCTATGCCGCCTCGTTGGGGGTGGATATCGAGAACCTGCTGGTGTCTCAGCCCGACACCGGCGAAATGGCCCTCG
AGATCGTTGACCAGCTGGTGCGTTCAGCGGCTGTCGATCTCGTGGTTGTCGACTCGGTTGCGGCGTTGACCCCTCGCGCT
GAGATTGAAGGGGAGATGGGTGATCTGGCTGTCGGCGCTCAGGCCCGTTTGATGAGCCAGGCGATGCGCAAGATCACCGG
CAACATCGGCAAGTCCGGTTGCACAGTGATCTTCCTCAACCAGCTCAGGCTCAAGATCGGCGTCACCTACGGCAATCCAG
AAACCACCACCGGTGGCAATGCGCTGAAGTTCTATGCCTCGGTGCGTCTCGATATCCGTCGCATTCAGACCCTCAAGCGC
GCCACGGAGGAGTACGGCATTCGGGCCAAGGTCAAGGTGGCCAAAAACAAGGTGGCACCACCCTTCCGCATCGCCGAATT
CGACATCCTGTTCGGCCGTGGCATCAGCACCTTGGGATGCCTGTTGGATCTCGCTGAGGAAACCGGTGTGGTCGTCCGTA
AAGGTGCTTGGTACAGCTACAACGGCGACAACGTTGGCCAGGGCCGCGACAACACCATCACTTGGCTTGAGCAAAACCCC
GAGGCCTGCCAAGAGATCGAGCAGCTCACCCGCCAAAAGCTCACTGCTGGCGCTGATGTGACAGCCAATTCGATGAAGCC
CCTGGCGGCGGTTGGCGCCAAGCGCAAGGAGGGAGCTGAGCGTCCGGCCGAGGCTCCCAAGCCCTTAGCCGAAGCCAGCT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.257

88.74

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.284

89.812

0.568
  recA Acinetobacter baumannii D1279779

64.907

86.327

0.56
  recA Pseudomonas stutzeri DSM 10701

64.907

86.327

0.56
  recA Neisseria gonorrhoeae strain FA1090

58.892

91.957

0.542
  recA Neisseria gonorrhoeae MS11

58.892

91.957

0.542
  recA Neisseria gonorrhoeae MS11

58.892

91.957

0.542
  recA Vibrio cholerae strain A1552

62.422

86.327

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

86.327

0.539
  recA Glaesserella parasuis strain SC1401

60.606

88.472

0.536
  recA Helicobacter pylori 26695

58.58

90.617

0.531
  recA Helicobacter pylori strain NCTC11637

58.58

90.617

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.806

89.812

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.372

86.595

0.523
  recA Bacillus subtilis subsp. subtilis str. 168

60.248

86.327

0.52
  recA Streptococcus mitis SK321

58.462

87.131

0.509
  recA Streptococcus mitis NCTC 12261

58.462

87.131

0.509
  recA Streptococcus pneumoniae D39

57.927

87.936

0.509
  recA Streptococcus pneumoniae R6

57.927

87.936

0.509
  recA Streptococcus pneumoniae TIGR4

57.927

87.936

0.509
  recA Streptococcus pneumoniae Rx1

57.927

87.936

0.509
  recA Streptococcus mutans UA159

57.716

86.863

0.501
  recA Latilactobacillus sakei subsp. sakei 23K

59.365

84.45

0.501
  recA Lactococcus lactis subsp. cremoris KW2

57.231

87.131

0.499
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

88.204

0.499
  recA Streptococcus pyogenes NZ131

56.575

87.668

0.496

Multiple sequence alignment