Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynPROSU1_RS02300 Genome accession   NZ_CP047951
Coordinates   457531..458652 (+) Length   373 a.a.
NCBI ID   WP_186571354.1    Uniprot ID   A0A7G8H7S4
Organism   Synechococcus sp. PROS-U-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 452531..463652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynPROSU1_RS02275 (SynPROSU1_00483) - 453409..453870 (+) 462 WP_006850745.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynPROSU1_RS02280 (SynPROSU1_00484) - 453837..454868 (+) 1032 WP_186571351.1 LdpA C-terminal domain-containing domain -
  SynPROSU1_RS02285 (SynPROSU1_00485) - 454891..456510 (+) 1620 WP_186571352.1 AAA family ATPase -
  SynPROSU1_RS02295 (SynPROSU1_00487) - 456695..457444 (+) 750 WP_186571353.1 HAD family hydrolase -
  SynPROSU1_RS02300 (SynPROSU1_00488) recA 457531..458652 (+) 1122 WP_186571354.1 recombinase RecA Machinery gene
  SynPROSU1_RS02305 (SynPROSU1_00489) - 458655..458999 (-) 345 WP_186571355.1 DUF1815 family protein -
  SynPROSU1_RS02310 (SynPROSU1_00490) - 459070..459321 (-) 252 WP_186571356.1 DUF2839 domain-containing protein -
  SynPROSU1_RS02315 (SynPROSU1_00491) - 459357..460802 (-) 1446 WP_186572183.1 helicase -
  SynPROSU1_RS02320 (SynPROSU1_00492) - 460886..461767 (+) 882 WP_186572182.1 prephenate/arogenate dehydrogenase -
  SynPROSU1_RS02325 (SynPROSU1_00493) crtD 461751..463253 (-) 1503 WP_186571357.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39641.30 Da        Isoelectric Point: 6.5241

>NTDB_id=418691 SynPROSU1_RS02300 WP_186571354.1 457531..458652(+) (recA) [Synechococcus sp. PROS-U-1]
MPADMKSSASDPRSSGEKDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPES
SGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSGAVDLVVIDSVAAL
TPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQ
TLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTITWM
EENPESTATIETLVRQKLTEGSEVKSNSMRPLAAAAKATVDKSTPGKAPEAAA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=418691 SynPROSU1_RS02300 WP_186571354.1 457531..458652(+) (recA) [Synechococcus sp. PROS-U-1]
ATGCCTGCAGATATGAAATCCAGTGCTTCCGACCCCCGCTCCTCTGGCGAGAAAGACAAGGCGCTGAATCTGGTCCTTGG
TCAGATCGAGCGCAACTTCGGCAAGGGGTCGATCATGCGGCTCGGCGATGCCTCTCGCATGAGGGTGGAGACGATCTCCA
CCGGTGCTCTGACCCTTGATCTAGCCCTGGGTGGTGGTTACCCGAAGGGTCGGGTGGTGGAGATTTACGGCCCGGAAAGT
TCTGGTAAGACCACCCTCACTCTGCACGCGATTGCTGAAGTGCAGAAGCGTGGTGGTGTGGCGGCTTTCGTGGATGCGGA
GCATGCTCTGGACCCCGTCTATGCCGCGTCGTTGGGTGTTGATGTGGAGAACCTTCTGGTCTCTCAGCCCGACACCGGCG
AGATGGCTCTCGAGATCGTCGACCAACTGGTGCGATCAGGGGCGGTGGATCTTGTCGTGATCGACTCGGTGGCCGCTCTC
ACTCCCCGCGCCGAGATCGAGGGAGAAATGGGAGACCTGGCGGTTGGCAGTCAGGCGCGTCTGATGAGTCAGGCCATGCG
CAAGATCACCGGCAACATCGGCAAGTCGGGTTGCACCGTCATTTTCCTCAACCAGCTGCGTCTCAAAATTGGTGTGACCT
ACGGGAATCCGGAGACGACCACTGGAGGCAATGCGCTCAAGTTCTATGCCTCGGTTCGCCTCGACATCCGTCGGATTCAG
ACGCTCAAGAAGGGGACGGAGGAATTCGGGATCAGGGCCAAAGTGAAAGTGGCGAAAAACAAGGTGGCGCCACCCTTCCG
CATTGCTGAATTCGATATCCTTTTCGGCCGTGGCATCAGCACCCTGGGCTGTCTGCTCGATCTCGCCGAAGAGACAGGAG
TGGTTGTGCGCAAGGGCGCTTGGTACAGCTACGAGGGAGACAACATCGGGCAGGGTCGCGACAACACCATCACCTGGATG
GAGGAGAACCCGGAATCGACGGCCACGATTGAGACGCTCGTGCGTCAAAAGCTGACGGAAGGTTCGGAAGTGAAGTCGAA
TTCCATGCGGCCCCTGGCGGCTGCTGCGAAGGCGACTGTCGATAAGTCGACTCCGGGTAAGGCCCCGGAAGCGGCTGCTT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8H7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.46

86.327

0.574
  recA Acinetobacter baumannii D1279779

65.528

86.327

0.566
  recA Neisseria gonorrhoeae MS11

60.87

92.493

0.563
  recA Neisseria gonorrhoeae MS11

60.87

92.493

0.563
  recA Neisseria gonorrhoeae strain FA1090

60.87

92.493

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.04

94.906

0.56
  recA Vibrio cholerae strain A1552

59.04

94.906

0.56
  recA Pseudomonas stutzeri DSM 10701

64.907

86.327

0.56
  recA Glaesserella parasuis strain SC1401

60.057

93.298

0.56
  recA Ralstonia pseudosolanacearum GMI1000

66.881

83.378

0.558
  recA Helicobacter pylori strain NCTC11637

59.172

90.617

0.536
  recA Helicobacter pylori 26695

59.172

90.617

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.878

88.204

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.681

86.595

0.525
  recA Streptococcus pneumoniae TIGR4

58.333

90.08

0.525
  recA Streptococcus pneumoniae Rx1

58.333

90.08

0.525
  recA Streptococcus pneumoniae D39

58.333

90.08

0.525
  recA Streptococcus pneumoniae R6

58.333

90.08

0.525
  recA Streptococcus mitis SK321

58.209

89.812

0.523
  recA Streptococcus mitis NCTC 12261

57.738

90.08

0.52
  recA Bacillus subtilis subsp. subtilis str. 168

60.436

86.059

0.52
  recA Lactococcus lactis subsp. cremoris KW2

57.313

89.812

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.233

92.225

0.509
  recA Streptococcus mutans UA159

58.154

87.131

0.507
  recA Streptococcus pyogenes NZ131

54

93.834

0.507
  recA Latilactobacillus sakei subsp. sakei 23K

58.75

85.791

0.504

Multiple sequence alignment