Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynA1562_RS01975 Genome accession   NZ_CP047950
Coordinates   386849..387973 (+) Length   374 a.a.
NCBI ID   WP_186494548.1    Uniprot ID   A0A7G8GZN0
Organism   Synechococcus sp. A15-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 381849..392973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynA1562_RS01950 (SynA1562_00412) - 382707..383168 (+) 462 WP_006850745.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynA1562_RS01955 (SynA1562_00413) - 383135..384166 (+) 1032 WP_186494545.1 LdpA C-terminal domain-containing domain -
  SynA1562_RS01960 (SynA1562_00414) - 384189..385829 (+) 1641 WP_186494546.1 AAA family ATPase -
  SynA1562_RS01970 (SynA1562_00416) - 386013..386762 (+) 750 WP_186494547.1 HAD family hydrolase -
  SynA1562_RS01975 (SynA1562_00417) recA 386849..387973 (+) 1125 WP_186494548.1 recombinase RecA Machinery gene
  SynA1562_RS01980 (SynA1562_00418) - 387976..388320 (-) 345 WP_186494549.1 DUF1815 family protein -
  SynA1562_RS01985 (SynA1562_00419) - 388391..388639 (-) 249 WP_186494550.1 DUF2839 domain-containing protein -
  SynA1562_RS01990 (SynA1562_00420) - 388675..390120 (-) 1446 WP_186495253.1 helicase -
  SynA1562_RS01995 (SynA1562_00421) - 390204..391085 (+) 882 WP_186494551.1 prephenate/arogenate dehydrogenase -
  SynA1562_RS02000 (SynA1562_00422) crtD 391069..392571 (-) 1503 WP_186494552.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39662.37 Da        Isoelectric Point: 6.5241

>NTDB_id=418681 SynA1562_RS01975 WP_186494548.1 386849..387973(+) (recA) [Synechococcus sp. A15-62]
MPADMKSGASDPRPSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPES
SGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAAL
TPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQ
TLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTISWM
EENPEATATIETLVRQKLTEGSEVKANSMRPLAAAVKTAAADKSAPAKTSEAAA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=418681 SynA1562_RS01975 WP_186494548.1 386849..387973(+) (recA) [Synechococcus sp. A15-62]
ATGCCTGCAGATATGAAATCCGGCGCTTCCGATCCCCGTCCCTCCGGCGAGAGGGACAAGGCGCTGAATCTGGTTTTGGG
TCAGATCGAACGCAACTTTGGCAAGGGATCGATCATGCGGCTGGGCGATGCCTCCCGCATGCGGGTGGAGACAATTTCCA
CCGGTGCGCTGACCCTTGACCTCGCGTTGGGTGGTGGTTATCCGAAGGGTCGCGTGGTGGAGATCTACGGCCCAGAAAGT
TCCGGTAAAACCACGCTCACCCTGCACGCGATTGCTGAAGTGCAGAAGCGCGGTGGTGTGGCGGCCTTTGTGGATGCGGA
GCATGCCCTGGATCCCGTGTATGCCGCTTCTCTGGGCGTTGATGTCGAGAACCTGCTGGTCTCCCAGCCCGACACCGGTG
AGATGGCGCTGGAGATTGTTGATCAACTGGTGCGATCCGCGGCGGTTGACCTCGTCGTTGTCGACTCGGTGGCGGCTCTC
ACCCCTCGTGCTGAGATCGAAGGTGAGATGGGAGACCTGGCGGTTGGTGCTCAAGCGCGTCTGATGAGTCAGGCGATGCG
GAAGATCACCGGCAACATCGGCAAGTCGGGTTGCACCGTCATCTTCCTCAACCAGCTGCGTCTCAAGATTGGTGTGACCT
ACGGCAATCCAGAGACCACCACTGGCGGCAACGCGCTCAAGTTCTATGCCTCAGTTCGCCTCGACATCCGTCGGATTCAG
ACCCTCAAGAAGGGAACCGAGGAATTTGGTATTCGGGCCAAGGTGAAAGTGGCGAAGAACAAGGTGGCGCCGCCCTTCCG
CATCGCTGAATTCGACATTCTCTTCGGCCGCGGTATCAGCACCCTGGGCTGTCTGCTTGATCTGGCTGAAGAAACGGGCG
TTGTTGTCCGCAAGGGCGCCTGGTACAGCTACGAGGGAGACAACATCGGTCAGGGTCGTGATAACACCATCTCCTGGATG
GAGGAGAACCCGGAGGCAACGGCCACCATCGAAACGTTGGTGCGTCAGAAGTTGACGGAGGGTTCTGAGGTGAAGGCGAA
TTCGATGCGCCCCCTTGCCGCTGCTGTGAAGACGGCTGCTGCTGATAAGTCGGCCCCGGCCAAGACCTCAGAGGCGGCGG
CCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8GZN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.149

86.096

0.57
  recA Acinetobacter baumannii D1279779

65.217

86.096

0.561
  recA Neisseria gonorrhoeae MS11

60.58

92.246

0.559
  recA Neisseria gonorrhoeae strain FA1090

60.58

92.246

0.559
  recA Neisseria gonorrhoeae MS11

60.58

92.246

0.559
  recA Pseudomonas stutzeri DSM 10701

64.907

86.096

0.559
  recA Ralstonia pseudosolanacearum GMI1000

66.238

83.155

0.551
  recA Vibrio cholerae strain A1552

62.733

86.096

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

86.096

0.54
  recA Glaesserella parasuis strain SC1401

62.229

86.364

0.537
  recA Streptococcus mitis NCTC 12261

57.143

93.583

0.535
  recA Helicobacter pylori strain NCTC11637

58.876

90.374

0.532
  recA Helicobacter pylori 26695

58.876

90.374

0.532
  recA Streptococcus pneumoniae TIGR4

58.631

89.84

0.527
  recA Streptococcus pneumoniae Rx1

58.631

89.84

0.527
  recA Streptococcus pneumoniae D39

58.631

89.84

0.527
  recA Streptococcus pneumoniae R6

58.631

89.84

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

88.77

0.527
  recA Streptococcus mitis SK321

58.507

89.572

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

85.829

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.748

85.829

0.521
  recA Lactococcus lactis subsp. cremoris KW2

57.015

89.572

0.511
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.523

91.979

0.511
  recA Streptococcus mutans UA159

58.462

86.898

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

85.561

0.505
  recA Streptococcus pyogenes NZ131

56.269

87.433

0.492

Multiple sequence alignment