Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynA15127_RS02105 Genome accession   NZ_CP047948
Coordinates   402223..403356 (+) Length   377 a.a.
NCBI ID   WP_043694940.1    Uniprot ID   A0A7G8GIA3
Organism   Synechococcus sp. A15-127     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 397223..408356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynA15127_RS02080 (SynA15127_00436) - 398066..398527 (+) 462 WP_186484813.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynA15127_RS02085 (SynA15127_00437) - 398494..399540 (+) 1047 WP_186484814.1 LdpA C-terminal domain-containing domain -
  SynA15127_RS02090 (SynA15127_00438) - 399563..401191 (+) 1629 WP_186484815.1 AAA family ATPase -
  SynA15127_RS02100 (SynA15127_00440) - 401387..402136 (+) 750 WP_186484816.1 HAD family hydrolase -
  SynA15127_RS02105 (SynA15127_00441) recA 402223..403356 (+) 1134 WP_043694940.1 recombinase RecA Machinery gene
  SynA15127_RS02110 (SynA15127_00442) - 403375..403731 (-) 357 WP_186484817.1 DUF1815 family protein -
  SynA15127_RS02115 (SynA15127_00443) - 403812..404060 (-) 249 WP_186484818.1 DUF2839 domain-containing protein -
  SynA15127_RS02120 (SynA15127_00444) - 404115..405560 (-) 1446 WP_186484819.1 helicase -
  SynA15127_RS02125 (SynA15127_00445) - 405644..406510 (+) 867 WP_186484820.1 prephenate/arogenate dehydrogenase -
  SynA15127_RS02130 (SynA15127_00446) crtD 406500..408002 (-) 1503 WP_186484821.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40274.91 Da        Isoelectric Point: 5.9958

>NTDB_id=418662 SynA15127_RS02105 WP_043694940.1 402223..403356(+) (recA) [Synechococcus sp. A15-127]
MPAEMKSSASDARSPEGRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIY
GPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDS
VAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDI
RRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNT
ITWLEQNPETTITVEQLVRQKLTEGSEVTANSMRPIAAAARTGVDRKADAKDAEAAA

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=418662 SynA15127_RS02105 WP_043694940.1 402223..403356(+) (recA) [Synechococcus sp. A15-127]
ATGCCTGCAGAGATGAAATCCTCCGCCTCCGATGCCCGTTCCCCGGAGGGCCGTCCCGGTGAGCGCGACAAGGCGCTGAA
CCTGGTGCTCGGTCAGATCGAGCGCAACTTCGGCAAGGGGTCGATCATGCGTCTCGGCGACGCCTCCCGCATGCGGGTGG
AAACCATTTCCACCGGTGCGCTCACTCTCGATCTTGCTCTCGGTGGCGGTTATCCCAAGGGTCGTGTCGTCGAGATCTAC
GGGCCTGAGAGTTCCGGTAAGACCACGCTCACCCTGCACGCCATCGCCGAGGTCCAGAAGCGCGGTGGTGTGGCGGCCTT
CGTGGATGCTGAGCACGCCCTTGATCCGGTCTATGCCGCTTCCCTCGGGGTGGACATCGAGAACCTGCTCGTCTCCCAGC
CCGACACCGGCGAGATGGCTCTGGAGATCGTCGATCAGCTGGTGCGTTCCGCGGCTGTCGACATCGTTGTGGTCGATTCG
GTCGCCGCTCTCACTCCACGGGCTGAGATCGAGGGCGAGATGGGAGATCTGGCCGTCGGCAGCCAGGCCCGTCTGATGAG
TCAGGCCATGCGGAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACGGTGATCTTCCTGAACCAGCTGCGCTTGAAGA
TCGGCGTCACCTACGGCAATCCCGAGACCACCACGGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTGCGACTCGATATC
CGCCGCATTCAGACCCTCAAGCGGGGCACGGAGGAGTACGGCATCCGCGCCAAGGTCAAAGTGGCCAAGAACAAGGTGGC
ACCTCCTTTCCGCATCGCCGAGTTCGACATCCTGTTCGGTCGCGGCATCAGCACGCTGGGCTGTCTGCTCGACCTTGCGG
AGGAAACCGGTGTGGTCGTGCGCAAAGGTGCCTGGTACAGCTACGAAGGCGACAACATCGGCCAGGGCCGCGATAACACC
ATCACCTGGCTGGAGCAGAACCCTGAAACCACGATCACCGTGGAGCAACTGGTGCGTCAGAAACTGACGGAGGGGTCGGA
GGTCACGGCCAATTCCATGCGCCCGATCGCTGCGGCAGCCCGCACCGGAGTGGACCGCAAGGCTGACGCGAAGGACGCCG
AGGCTGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8GIA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.559

87.798

0.576
  recA Acinetobacter baumannii D1279779

64.596

85.411

0.552
  recA Pseudomonas stutzeri DSM 10701

64.596

85.411

0.552
  recA Glaesserella parasuis strain SC1401

60.35

90.981

0.549
  recA Vibrio cholerae strain A1552

63.043

85.411

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.043

85.411

0.538
  recA Ralstonia pseudosolanacearum GMI1000

64.952

82.493

0.536
  recA Neisseria gonorrhoeae MS11

60.542

88.064

0.533
  recA Neisseria gonorrhoeae strain FA1090

60.542

88.064

0.533
  recA Neisseria gonorrhoeae MS11

60.542

88.064

0.533
  recA Streptococcus mitis NCTC 12261

56.812

91.512

0.52
  recA Helicobacter pylori 26695

57.988

89.655

0.52
  recA Helicobacter pylori strain NCTC11637

57.988

89.655

0.52
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

85.146

0.52
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

87.268

0.52
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

85.676

0.517
  recA Lactococcus lactis subsp. cremoris KW2

54.648

94.164

0.515
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

85.146

0.512
  recA Streptococcus mitis SK321

56.105

91.247

0.512
  recA Streptococcus pneumoniae R6

57.44

89.125

0.512
  recA Streptococcus pneumoniae Rx1

57.44

89.125

0.512
  recA Streptococcus pneumoniae D39

57.44

89.125

0.512
  recA Streptococcus pneumoniae TIGR4

57.44

89.125

0.512
  recA Streptococcus mutans UA159

58.154

86.207

0.501
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

85.942

0.493
  recA Streptococcus pyogenes NZ131

56.269

86.737

0.488

Multiple sequence alignment