Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynROS8604_RS02855 Genome accession   NZ_CP047946
Coordinates   550279..551427 (+) Length   382 a.a.
NCBI ID   WP_006854833.1    Uniprot ID   A0A7G8G0G7
Organism   Synechococcus sp. ROS8604     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 545279..556427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynROS8604_RS02830 (SynROS8604_00645) - 545966..546427 (+) 462 WP_186545055.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynROS8604_RS02835 (SynROS8604_00646) - 546436..547467 (+) 1032 WP_186545056.1 LdpA C-terminal domain-containing domain -
  SynROS8604_RS02840 (SynROS8604_00647) - 547534..549165 (+) 1632 WP_186545057.1 AAA family ATPase -
  SynROS8604_RS02850 (SynROS8604_00649) - 549361..550125 (+) 765 WP_186545058.1 HAD family hydrolase -
  SynROS8604_RS02855 (SynROS8604_00650) recA 550279..551427 (+) 1149 WP_006854833.1 recombinase RecA Machinery gene
  SynROS8604_RS02860 (SynROS8604_00651) - 551424..551774 (-) 351 WP_186545059.1 DUF1815 family protein -
  SynROS8604_RS02865 (SynROS8604_00652) - 551866..552105 (-) 240 WP_006854835.1 DUF2839 domain-containing protein -
  SynROS8604_RS02870 (SynROS8604_00653) - 552147..553601 (-) 1455 WP_186545060.1 helicase -
  SynROS8604_RS02875 (SynROS8604_00655) - 553668..554564 (+) 897 WP_255445159.1 prephenate/arogenate dehydrogenase -
  SynROS8604_RS02880 (SynROS8604_00656) crtD 554574..556103 (-) 1530 WP_186545061.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40418.12 Da        Isoelectric Point: 7.1447

>NTDB_id=418651 SynROS8604_RS02855 WP_006854833.1 550279..551427(+) (recA) [Synechococcus sp. ROS8604]
MPADVKAAQSSQGNPRPGEKDKALDLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPDAKEAIEVLVRQKLTEGSEVTANSMRPLAAAARSAAAKPAAKPADTDKKSAVDGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=418651 SynROS8604_RS02855 WP_006854833.1 550279..551427(+) (recA) [Synechococcus sp. ROS8604]
ATGCCAGCCGACGTGAAAGCCGCTCAGTCCTCCCAAGGCAATCCCCGTCCAGGGGAAAAGGACAAGGCCTTGGACCTTGT
GCTCGGTCAAATCGAGCGAAATTTTGGGAAGGGTTCGATCATGCGTTTGGGAGATGCCTCCCGAATGCGGGTGGAAACCA
TCTCCACGGGGGCTCTCACTCTGGATCTAGCCCTTGGTGGTGGGTACCCCAAGGGGCGAGTGGTGGAGGTTTATGGACCT
GAAAGTTCAGGAAAAACCACGCTCACGCTTCATGCCATCGCTGAGGTGCAAAAGCGTGGAGGGGTGGCGGCCTTCGTCGA
TGCTGAGCACGCCCTTGATCCTGTCTATGCGGCTTCTCTCGGCGTTGACATCGAAAATCTGCTGGTCTCCCAGCCGGATA
CGGGTGAGATGGCGCTTGAGATCGTCGATCAGTTGGTTCGCTCTGCTGCGGTCGACATTGTGGTGGTCGACTCGGTTGCC
GCGCTGACACCTCGCGCTGAGATTGAGGGGGAAATGGGGGATTTGGCTGTTGGAGCGCAAGCGCGCCTGATGAGCCAAGC
CATGCGCAAGATCACTGGCAACATTGGCAAGTCAGGTTGCACCGTGATCTTCCTGAACCAGCTTCGCTTGAAGATCGGAG
TGACCTACGGCAATCCCGAAACCACCACTGGTGGCAATGCACTGAAGTTTTACGCCTCGGTAAGACTTGATATTCGCCGG
ATCCAAACTCTGAAGCGCGGCACTGAGGAGTACGGCATTCGGGCGAAGGTCAAGGTGGCGAAAAACAAGGTGGCACCTCC
GTTTCGCATTGCTGAGTTCGATATTTTGTTTGGGCGTGGGATCAGCACGCTCGGATGTGTTCTCGATTTGGCCGAGGAAA
CGGGTGTGGTGACGCGCAAAGGGGCCTGGTACAGCTACGAGGGCGACAACATTGGCCAAGGTCGTGACAACACCATCGGC
TGGCTCGAGCAAAACCCTGACGCCAAGGAGGCCATCGAAGTGCTTGTGCGTCAGAAGTTGACCGAAGGATCGGAAGTGAC
GGCGAATTCGATGCGTCCTTTGGCTGCTGCGGCCCGCTCAGCTGCAGCCAAGCCTGCGGCGAAACCGGCTGACACGGATA
AAAAGTCCGCTGTTGATGGGGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8G0G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.257

86.649

0.565
  recA Acinetobacter baumannii D1279779

64.907

84.293

0.547
  recA Pseudomonas stutzeri DSM 10701

64.286

84.293

0.542
  recA Neisseria gonorrhoeae MS11

59.475

89.791

0.534
  recA Neisseria gonorrhoeae strain FA1090

59.475

89.791

0.534
  recA Neisseria gonorrhoeae MS11

59.475

89.791

0.534
  recA Ralstonia pseudosolanacearum GMI1000

64.63

81.414

0.526
  recA Glaesserella parasuis strain SC1401

61.35

85.34

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.293

0.524
  recA Vibrio cholerae strain A1552

62.112

84.293

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

84.031

0.521
  recA Helicobacter pylori 26695

58.58

88.482

0.518
  recA Helicobacter pylori strain NCTC11637

58.58

88.482

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

86.126

0.513
  recA Streptococcus mitis NCTC 12261

55.301

91.361

0.505
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

84.555

0.505
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

83.77

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.418

87.696

0.495
  recA Streptococcus pneumoniae D39

56.25

87.958

0.495
  recA Streptococcus pneumoniae TIGR4

56.25

87.958

0.495
  recA Streptococcus pneumoniae R6

56.25

87.958

0.495
  recA Streptococcus pneumoniae Rx1

56.25

87.958

0.495
  recA Streptococcus mitis SK321

56.287

87.435

0.492
  recA Streptococcus mutans UA159

57.538

85.079

0.49
  recA Streptococcus pyogenes NZ131

55.963

85.602

0.479
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.962

82.723

0.471

Multiple sequence alignment