Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynRS9907_RS01825 Genome accession   NZ_CP047944
Coordinates   346064..347185 (+) Length   373 a.a.
NCBI ID   WP_115132346.1    Uniprot ID   -
Organism   Synechococcus sp. RS9907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 341064..352185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynRS9907_RS01800 (SynRS9907_00364) - 341922..342383 (+) 462 WP_006850745.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynRS9907_RS01805 (SynRS9907_00365) - 342350..343381 (+) 1032 WP_188021628.1 LdpA C-terminal domain-containing domain -
  SynRS9907_RS01810 (SynRS9907_00366) - 343404..345044 (+) 1641 WP_188021629.1 AAA family ATPase -
  SynRS9907_RS01820 (SynRS9907_00368) - 345228..345977 (+) 750 WP_188021630.1 HAD family hydrolase -
  SynRS9907_RS01825 (SynRS9907_00369) recA 346064..347185 (+) 1122 WP_115132346.1 recombinase RecA Machinery gene
  SynRS9907_RS01830 (SynRS9907_00370) - 347188..347532 (-) 345 WP_114987287.1 DUF1815 family protein -
  SynRS9907_RS01835 (SynRS9907_00371) - 347602..347850 (-) 249 WP_115080391.1 DUF2839 domain-containing protein -
  SynRS9907_RS01840 (SynRS9907_00372) - 347886..349331 (-) 1446 WP_188021631.1 helicase -
  SynRS9907_RS01845 (SynRS9907_00373) - 349415..350296 (+) 882 WP_188021632.1 prephenate/arogenate dehydrogenase -
  SynRS9907_RS01850 (SynRS9907_00374) crtD 350280..351782 (-) 1503 WP_188021633.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39559.29 Da        Isoelectric Point: 6.5234

>NTDB_id=418629 SynRS9907_RS01825 WP_115132346.1 346064..347185(+) (recA) [Synechococcus sp. RS9907]
MPADMKSGASDPRSSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPES
SGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAAL
TPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQ
TLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTITWM
EENPDATATIETLVRQKLTEGSEVKSNSMRPLAAAAKAAADKPVVAKAPEAAA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=418629 SynRS9907_RS01825 WP_115132346.1 346064..347185(+) (recA) [Synechococcus sp. RS9907]
ATGCCTGCAGATATGAAATCCGGCGCTTCCGATCCCCGTTCCTCCGGCGAGAGGGACAAGGCGCTGAATCTGGTGCTGGG
TCAGATCGAGCGCAACTTCGGCAAGGGATCGATCATGCGGTTGGGCGATGCCTCCCGCATGCGGGTGGAGACGATTTCCA
CCGGTGCGCTGACCCTTGACCTCGCCTTGGGCGGTGGTTACCCGAAGGGTCGCGTGGTGGAGATCTACGGCCCGGAAAGT
TCCGGTAAAACCACGCTCACCCTGCACGCGATTGCAGAAGTGCAGAAGCGTGGTGGTGTGGCGGCCTTCGTGGATGCGGA
GCATGCCCTGGATCCCGTTTATGCCGCTTCGCTGGGCGTTGATGTGGAGAACCTGCTGGTCTCTCAGCCCGACACCGGCG
AGATGGCGCTGGAGATCGTTGATCAACTGGTGCGATCGGCGGCGGTGGATCTGGTCGTTGTCGACTCAGTGGCTGCCCTC
ACCCCCCGCGCTGAGATCGAAGGTGAGATGGGAGATCTGGCGGTTGGCGCCCAGGCGCGTCTGATGAGTCAGGCGATGCG
GAAGATCACCGGCAACATCGGCAAGTCGGGTTGCACCGTCATCTTCCTCAACCAGTTGCGTCTCAAGATTGGTGTGACCT
ACGGCAATCCAGAGACCACCACTGGAGGCAACGCGCTCAAGTTCTATGCCTCGGTTCGCCTCGACATCCGTCGGATTCAG
ACCCTCAAGAAGGGAACCGAAGAATTCGGCATCAGGGCCAAGGTGAAAGTGGCGAAAAACAAGGTGGCGCCACCCTTCCG
CATTGCCGAATTCGACATTCTCTTCGGCCGCGGCATCAGCACCCTGGGCTGTCTGCTGGATCTCGCCGAAGAGACAGGCG
TTGTTGTCCGTAAGGGCGCCTGGTACAGCTACGAGGGAGACAACATCGGTCAGGGTCGCGACAACACCATCACCTGGATG
GAGGAAAACCCTGATGCAACAGCCACCATCGAAACGCTGGTGCGTCAAAAGCTGACGGAGGGCTCTGAGGTGAAGTCGAA
TTCCATGCGGCCTTTGGCCGCCGCTGCGAAGGCGGCTGCTGACAAGCCCGTTGTGGCAAAGGCTCCGGAAGCCGCCGCCT
GA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

63.881

89.812

0.574
  recA Acinetobacter baylyi ADP1

66.149

86.327

0.571
  recA Acinetobacter baumannii D1279779

65.217

86.327

0.563
  recA Glaesserella parasuis strain SC1401

58.592

95.174

0.558
  recA Neisseria gonorrhoeae MS11

60.29

92.493

0.558
  recA Neisseria gonorrhoeae MS11

60.29

92.493

0.558
  recA Neisseria gonorrhoeae strain FA1090

60.29

92.493

0.558
  recA Pseudomonas stutzeri DSM 10701

64.596

86.327

0.558
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.71

92.493

0.552
  recA Vibrio cholerae strain A1552

59.71

92.493

0.552
  recA Helicobacter pylori strain NCTC11637

58.876

90.617

0.534
  recA Helicobacter pylori 26695

58.876

90.617

0.534
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

86.059

0.525
  recA Streptococcus pneumoniae Rx1

58.333

90.08

0.525
  recA Streptococcus pneumoniae D39

58.333

90.08

0.525
  recA Streptococcus pneumoniae R6

58.333

90.08

0.525
  recA Streptococcus pneumoniae TIGR4

58.333

90.08

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

88.204

0.523
  recA Streptococcus mitis SK321

58.209

89.812

0.523
  recA Streptococcus mitis NCTC 12261

57.738

90.08

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

86.059

0.52
  recA Lactococcus lactis subsp. cremoris KW2

57.313

89.812

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.233

92.225

0.509
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

85.791

0.509
  recA Streptococcus mutans UA159

58.154

87.131

0.507
  recA Streptococcus pyogenes NZ131

56.269

87.668

0.493

Multiple sequence alignment