Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynRS9909_RS02640 Genome accession   NZ_CP047943
Coordinates   538490..539692 (+) Length   400 a.a.
NCBI ID   WP_038000839.1    Uniprot ID   -
Organism   Synechococcus sp. RS9909     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533490..544692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynRS9909_RS02615 (SynRS9909_00538) - 534201..534662 (+) 462 WP_007100615.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynRS9909_RS02620 (SynRS9909_00539) - 534669..535715 (+) 1047 WP_038000842.1 LdpA C-terminal domain-containing domain -
  SynRS9909_RS02625 (SynRS9909_00540) - 535752..537395 (+) 1644 WP_007100613.1 AAA family ATPase -
  SynRS9909_RS02635 (SynRS9909_00542) - 537583..538359 (+) 777 WP_007100612.1 HAD family hydrolase -
  SynRS9909_RS02640 (SynRS9909_00543) recA 538490..539692 (+) 1203 WP_038000839.1 recombinase RecA Machinery gene
  SynRS9909_RS02645 (SynRS9909_00544) - 539681..540028 (-) 348 WP_007100610.1 DUF1815 family protein -
  SynRS9909_RS02650 - 540110..540349 (-) 240 WP_007100609.1 DUF2839 domain-containing protein -
  SynRS9909_RS02655 (SynRS9909_00546) - 540390..541838 (-) 1449 WP_007100608.1 hypothetical protein -
  SynRS9909_RS02660 (SynRS9909_00547) - 541921..542850 (+) 930 WP_007100607.1 prephenate/arogenate dehydrogenase -
  SynRS9909_RS02665 (SynRS9909_00548) crtD 542810..544342 (-) 1533 WP_007100606.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 41830.52 Da        Isoelectric Point: 7.1443

>NTDB_id=418619 SynRS9909_RS02640 WP_038000839.1 538490..539692(+) (recA) [Synechococcus sp. RS9909]
MPLDVKASPASGSDPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETIPTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTIG
WLEQNPDAKDAIEALVRQKLTEGSEVTANSMRPLAAAARSAASQASSAAATSAAATSAPSAASNDKPAAANKPGAASSAA

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=418619 SynRS9909_RS02640 WP_038000839.1 538490..539692(+) (recA) [Synechococcus sp. RS9909]
ATGCCACTCGACGTGAAAGCTTCTCCCGCCTCCGGCTCCGACCCCCGTCCAGGTGAGCGCGACAAAGCGCTGAATCTTGT
GCTCGGTCAGATCGAGCGCAATTTCGGCAAGGGGTCGATCATGCGCCTCGGGGATGCGTCCCGGATGCGGGTTGAGACCA
TTCCCACCGGTGCCCTCACCCTGGATCTCGCCCTCGGTGGCGGCTATCCGAAGGGGCGTGTGGTTGAGGTGTATGGACCG
GAAAGCTCCGGTAAGACCACGCTGACGCTCCATGCGATCGCCGAGGTGCAGCGCCGTGGTGGTGTGGCCGCCTTCGTGGA
TGCGGAGCATGCTCTGGATCCGGTGTACGCCGCCTCCCTGGGCGTCGACATCGAGAACCTGCTCGTCTCCCAGCCCGACA
CCGGCGAGATGGCCCTGGAGATTGTCGATCAGCTGGTGCGATCCGCGGCTGTCGACATCGTCGTGGTCGACTCGGTGGCG
GCCCTCACGCCGCGGGCCGAGATTGAGGGTGAGATGGGCGATCTGGCTGTGGGCAGCCAGGCCCGCCTGATGAGCCAGGC
GATGCGCAAGATCACCGGCAACATTGGCAAATCCGGTTGCACGGTGATTTTCCTCAACCAGTTGCGACTCAAGATCGGCG
TCACCTACGGCAATCCGGAAACGACCACCGGCGGGAATGCCCTCAAGTTCTATGCATCGGTGCGCCTGGATATTCGTCGC
ATTCAGACGCTCAAGCGCGGCACTGAGGAATACGGGATCCGCGCGAAGGTGAAAGTGGCGAAGAACAAGGTGGCGCCACC
CTTCCGCATCGCCGAGTTCGACATCCTTTTCGGCCGTGGGATCAGCACCCTTGGTTGCCTGCTCGATCTGGCGGAGGAAA
CCGGTGTGGTGATTCGCAAGGGGGCCTGGTACAGCTACGAGGGCGACAACATCGGGCAGGGCCGCGACAACACCATCGGC
TGGCTGGAGCAGAACCCGGACGCGAAGGACGCGATCGAAGCCCTGGTGCGTCAGAAACTCACGGAAGGTTCCGAAGTGAC
CGCCAATTCGATGCGTCCCCTCGCTGCGGCAGCGCGCAGTGCCGCCAGCCAAGCGTCTTCGGCAGCGGCGACCTCGGCAG
CGGCGACGTCTGCACCGTCTGCGGCTAGCAATGACAAACCGGCTGCCGCAAACAAGCCGGGCGCTGCCTCGTCAGCTGCC
TGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

82.75

0.538
  recA Acinetobacter baumannii D1279779

63.975

80.5

0.515
  recA Pseudomonas stutzeri DSM 10701

63.975

80.5

0.515
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

80.5

0.5
  recA Vibrio cholerae strain A1552

62.112

80.5

0.5
  recA Neisseria gonorrhoeae MS11

60.241

83

0.5
  recA Neisseria gonorrhoeae MS11

60.241

83

0.5
  recA Neisseria gonorrhoeae strain FA1090

60.241

83

0.5
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

80.25

0.5
  recA Glaesserella parasuis strain SC1401

61.043

81.5

0.498
  recA Ralstonia pseudosolanacearum GMI1000

63.987

77.75

0.497
  recA Helicobacter pylori 26695

57.988

84.5

0.49
  recA Helicobacter pylori strain NCTC11637

57.988

84.5

0.49
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

82.25

0.488
  recA Streptococcus mitis NCTC 12261

54.93

88.75

0.488
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

80.25

0.48
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

80

0.478
  recA Streptococcus pneumoniae D39

56.845

84

0.477
  recA Streptococcus pneumoniae R6

56.845

84

0.477
  recA Streptococcus pneumoniae TIGR4

56.845

84

0.477
  recA Streptococcus pneumoniae Rx1

56.845

84

0.477
  recA Lactococcus lactis subsp. cremoris KW2

56.716

83.75

0.475
  recA Streptococcus mitis SK321

56.587

83.5

0.473
  recA Streptococcus mutans UA159

57.538

81.25

0.467
  recA Streptococcus pyogenes NZ131

55.963

81.75

0.457
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.962

79

0.45

Multiple sequence alignment