Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynMVIR181_RS02320 Genome accession   NZ_CP047942
Coordinates   447182..448330 (+) Length   382 a.a.
NCBI ID   WP_186589840.1    Uniprot ID   -
Organism   Synechococcus sp. MVIR-18-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442182..453330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynMVIR181_RS02295 (SynMVIR181_00497) - 442866..443327 (+) 462 WP_186589837.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynMVIR181_RS02300 (SynMVIR181_00498) - 443396..444367 (+) 972 WP_255444489.1 LdpA C-terminal domain-containing domain -
  SynMVIR181_RS02305 (SynMVIR181_00499) - 444434..446068 (+) 1635 WP_186589838.1 AAA family ATPase -
  SynMVIR181_RS02315 (SynMVIR181_00501) - 446264..447028 (+) 765 WP_186589839.1 HAD family hydrolase -
  SynMVIR181_RS02320 (SynMVIR181_00502) recA 447182..448330 (+) 1149 WP_186589840.1 recombinase RecA Machinery gene
  SynMVIR181_RS02325 (SynMVIR181_00503) - 448327..448677 (-) 351 WP_186589841.1 DUF1815 family protein -
  SynMVIR181_RS02330 (SynMVIR181_00504) - 448769..449008 (-) 240 WP_186524591.1 DUF2839 domain-containing protein -
  SynMVIR181_RS02335 (SynMVIR181_00505) - 449050..450504 (-) 1455 WP_186589842.1 helicase -
  SynMVIR181_RS02340 (SynMVIR181_00506) - 450589..451467 (+) 879 WP_186590451.1 prephenate/arogenate dehydrogenase -
  SynMVIR181_RS02345 (SynMVIR181_00507) crtD 451477..453006 (-) 1530 WP_186589843.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40503.19 Da        Isoelectric Point: 6.7396

>NTDB_id=418608 SynMVIR181_RS02320 WP_186589840.1 447182..448330(+) (recA) [Synechococcus sp. MVIR-18-1]
MPADVKASHSSAGDPRPGERDKALDLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVIDSVA
ALTPRAEIEGEMGDLSVGGQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCILDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVTSNSMRPLAAAARSAAAKPLAKPADTDKKSLADGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=418608 SynMVIR181_RS02320 WP_186589840.1 447182..448330(+) (recA) [Synechococcus sp. MVIR-18-1]
ATGCCAGCCGACGTGAAAGCCTCTCATTCCTCCGCAGGAGATCCCCGTCCAGGTGAGAGGGATAAAGCCTTGGACCTTGT
GCTCGGTCAGATCGAGCGGAATTTTGGCAAGGGCTCAATTATGCGTTTGGGAGATGCCTCCCGGATGCGGGTGGAAACCA
TCTCCACGGGCGCTCTCACTCTCGACCTTGCCCTAGGCGGTGGGTACCCCAAGGGGCGAGTGGTGGAGGTTTACGGGCCT
GAAAGTTCAGGCAAGACCACACTCACGCTGCATGCCATCGCTGAGGTGCAAAAGCGTGGAGGGGTGGCGGCATTCGTCGA
CGCTGAGCACGCCCTAGATCCTGTCTATGCGGCTTCCCTTGGTGTTGATGTAGAAAATCTCCTGGTCTCCCAGCCGGATA
CGGGTGAGATGGCCCTTGAAATCGTCGATCAGCTCGTTCGTTCTGCCGCTGTTGACATCGTGGTGATCGACTCCGTCGCT
GCGTTGACGCCTCGGGCTGAGATTGAAGGAGAGATGGGTGATTTGTCTGTTGGGGGCCAAGCTCGCTTGATGAGTCAGGC
CATGCGCAAGATCACTGGCAACATCGGTAAATCCGGTTGCACCGTGATCTTCCTGAACCAACTTCGTCTGAAGATCGGAG
TGACCTATGGCAATCCTGAGACCACAACGGGTGGAAATGCGCTGAAGTTCTACGCCTCAGTGCGGCTTGATATTCGCCGG
ATCCAAACTCTCAAACGTGGCACTGAGGAGTACGGCATTCGGGCGAAAGTGAAGGTGGCGAAAAACAAGGTGGCGCCTCC
GTTCAGGATTGCCGAATTCGATATTCTTTTTGGGCGCGGCATCAGTACGCTCGGATGCATTCTCGATCTGGCTGAGGAAA
CAGGAGTCGTCACGCGTAAAGGGGCCTGGTACAGCTACGAGGGCGACAACATTGGCCAAGGTCGTGACAACACAATTGGT
TGGCTCGAGCAAAACCCCGAAGCCAAGGACGCCATCGAAGTGCTTGTGCGTCAGAAGTTGACCGAAGGATCGGAAGTGAC
CTCGAATTCGATGCGCCCTTTGGCTGCTGCTGCTCGCTCAGCGGCTGCCAAGCCGTTGGCGAAACCTGCTGATACGGATA
AAAAGTCCCTTGCTGATGGGGCTGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.048

86.649

0.555
  recA Pseudomonas stutzeri DSM 10701

64.596

84.293

0.545
  recA Acinetobacter baumannii D1279779

63.665

84.293

0.537
  recA Ralstonia pseudosolanacearum GMI1000

65.916

81.414

0.537
  recA Neisseria gonorrhoeae strain FA1090

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Glaesserella parasuis strain SC1401

61.35

85.34

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

84.293

0.518
  recA Vibrio cholerae strain A1552

61.491

84.293

0.518
  recA Helicobacter pylori strain NCTC11637

58.58

88.482

0.518
  recA Helicobacter pylori 26695

58.58

88.482

0.518
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.031

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

86.126

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.125

84.031

0.505
  recA Lactococcus lactis subsp. cremoris KW2

57.015

87.696

0.5
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

83.77

0.497
  recA Streptococcus pneumoniae Rx1

56.213

88.482

0.497
  recA Streptococcus pneumoniae D39

56.213

88.482

0.497
  recA Streptococcus pneumoniae R6

56.213

88.482

0.497
  recA Streptococcus pneumoniae TIGR4

56.213

88.482

0.497
  recA Streptococcus mitis SK321

54.942

90.052

0.495
  recA Streptococcus mitis NCTC 12261

55.917

88.482

0.495
  recA Streptococcus mutans UA159

57.846

85.079

0.492
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.389

87.435

0.484
  recA Streptococcus pyogenes NZ131

55.963

85.602

0.479

Multiple sequence alignment