Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CyaNS01_RS12080 Genome accession   NZ_CP047940
Coordinates   2301214..2302407 (-) Length   397 a.a.
NCBI ID   WP_186697276.1    Uniprot ID   -
Organism   Cyanobium sp. NS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296214..2307407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CyaNS01_RS12055 (CyaNS01_02536) crtD 2296430..2297995 (+) 1566 WP_186697271.1 C-3',4' desaturase CrtD -
  CyaNS01_RS12060 (CyaNS01_02537) - 2297958..2298857 (-) 900 WP_186697272.1 prephenate/arogenate dehydrogenase -
  CyaNS01_RS12065 (CyaNS01_02538) - 2298913..2300421 (+) 1509 WP_186697273.1 helicase -
  CyaNS01_RS12070 (CyaNS01_02539) - 2300470..2300712 (+) 243 WP_186697274.1 DUF2839 domain-containing protein -
  CyaNS01_RS12075 (CyaNS01_02540) - 2300808..2301176 (+) 369 WP_186697275.1 DUF1815 family protein -
  CyaNS01_RS12080 (CyaNS01_02541) recA 2301214..2302407 (-) 1194 WP_186697276.1 recombinase RecA Machinery gene
  CyaNS01_RS12085 (CyaNS01_02542) - 2302524..2303273 (-) 750 WP_186697277.1 HAD family hydrolase -
  CyaNS01_RS12095 (CyaNS01_02544) - 2303626..2305224 (-) 1599 WP_186700772.1 AAA family ATPase -
  CyaNS01_RS12100 (CyaNS01_02545) - 2305299..2306348 (-) 1050 WP_186700774.1 LdpA C-terminal domain-containing domain -
  CyaNS01_RS12105 (CyaNS01_02546) - 2306369..2306833 (-) 465 WP_186697278.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 41607.35 Da        Isoelectric Point: 6.5232

>NTDB_id=418591 CyaNS01_RS12080 WP_186697276.1 2301214..2302407(-) (recA) [Cyanobium sp. NS01]
MPADSKAASYVSAAASSGGAASPADARAAAERDKALGLVLNQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGG
YPKGRVVEVYGPESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRS
AAVDIVVVDSVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGSPETTTGGNAL
KFYASVRLDIRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETAVVIRKGAWYSYEG
DNIGQGRDNTITWLEQNPDQAVEIEQRTRQKLKEGSEVTANSLKPLAAAAKAAVVAQPVGAEDGSGTPAAGKLPVAG

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=418591 CyaNS01_RS12080 WP_186697276.1 2301214..2302407(-) (recA) [Cyanobium sp. NS01]
ATGCCTGCTGATTCCAAGGCCGCTTCCTACGTCTCTGCCGCTGCCTCCTCCGGTGGTGCGGCGTCCCCTGCCGATGCCCG
GGCCGCCGCGGAGCGAGACAAGGCCCTCGGCCTGGTGCTCAACCAGATCGAGCGCAATTTCGGCAAGGGCTCGATCATGC
GGCTGGGGGACGCCTCCCGCATGCGGGTGGAGACCATCTCCACCGGGGCCTTGACCCTGGACCTGGCCCTCGGCGGCGGC
TACCCCAAGGGCCGGGTGGTGGAGGTGTATGGGCCCGAGAGCTCCGGCAAGACCACCCTGACCCTCCATGCCATTGCCGA
GGTTCAGAAGCGCGGAGGGGTGGCTGCCTTCGTGGATGCGGAACACGCCCTCGATCCGGTCTACGCGGCTTCGCTTGGCG
TCGATATCGAGAATCTGCTGGTGTCGCAGCCGGACACCGGCGAGATGGCCCTGGAGATCGTCGACCAGCTGGTGCGCTCC
GCCGCCGTGGACATCGTGGTGGTCGATTCCGTGGCGGCCCTCACCCCCAGGGCTGAGATTGAGGGTGAGATGGGTGATCT
GGCCGTGGGCAGCCAGGCCAGGCTGATGAGCCAGGCGATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACGG
TGATCTTCCTGAACCAGCTGCGCCAGAAGATCGGCGTCACCTATGGCAGCCCGGAAACCACCACCGGTGGCAATGCGCTC
AAGTTCTATGCCTCGGTGCGTCTCGACATCCGCCGCATCCAGACCCTCAAGCGCGGCACCGAGGAGTACGGCATCCGGGC
CAAGGTGAAGGTGGCCAAAAACAAGGTGGCCCCGCCGTTCCGGATCGCCGAGTTCGACATCCTCTTCGGCCGCGGCATCA
GCACCCTCGGTTGCCTGCTGGACCTGGCCGAGGAAACCGCCGTGGTGATCCGCAAGGGCGCCTGGTACAGCTACGAGGGC
GACAACATCGGCCAGGGGCGCGACAACACGATCACCTGGCTGGAGCAGAACCCCGACCAGGCCGTGGAGATCGAACAACG
CACCCGTCAGAAGCTCAAGGAAGGCTCGGAGGTGACGGCCAACTCGCTCAAGCCCCTGGCTGCCGCCGCCAAAGCAGCTG
TTGTGGCTCAGCCCGTGGGTGCTGAGGACGGCTCTGGAACCCCAGCAGCAGGGAAGCTGCCGGTGGCCGGATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(34-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.46

81.108

0.539
  recA Acinetobacter baumannii D1279779

65.528

81.108

0.531
  recA Pseudomonas stutzeri DSM 10701

64.286

81.108

0.521
  recA Ralstonia pseudosolanacearum GMI1000

65.273

78.338

0.511
  recA Helicobacter pylori strain NCTC11637

59.172

85.139

0.504
  recA Helicobacter pylori 26695

59.172

85.139

0.504
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.997

85.39

0.504
  recA Glaesserella parasuis strain SC1401

61.61

81.36

0.501
  recA Vibrio cholerae strain A1552

61.801

81.108

0.501
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

81.108

0.501
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

81.108

0.499
  recA Neisseria gonorrhoeae strain FA1090

63.548

78.086

0.496
  recA Neisseria gonorrhoeae MS11

63.548

78.086

0.496
  recA Neisseria gonorrhoeae MS11

63.548

78.086

0.496
  recA Streptococcus mitis NCTC 12261

55.874

87.909

0.491
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

80.856

0.489
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

81.36

0.484
  recA Lactococcus lactis subsp. cremoris KW2

56.637

85.39

0.484
  recA Streptococcus pneumoniae R6

56.176

85.642

0.481
  recA Streptococcus pneumoniae Rx1

56.176

85.642

0.481
  recA Streptococcus pneumoniae D39

56.176

85.642

0.481
  recA Streptococcus pneumoniae TIGR4

56.176

85.642

0.481
  recA Streptococcus mitis SK321

57.012

82.62

0.471
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.325

85.139

0.471
  recA Streptococcus mutans UA159

56.923

81.864

0.466
  recA Streptococcus pyogenes NZ131

55.963

82.368

0.461

Multiple sequence alignment