Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynBMKMC1_RS02635 Genome accession   NZ_CP047939
Coordinates   507179..508327 (+) Length   382 a.a.
NCBI ID   WP_011932353.1    Uniprot ID   -
Organism   Synechococcus sp. BMK-MC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 502179..513327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynBMKMC1_RS02610 (SynBMKMC1_00556) - 502858..503319 (+) 462 WP_011932349.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynBMKMC1_RS02615 (SynBMKMC1_00557) - 503382..504359 (+) 978 WP_255486261.1 LdpA C-terminal domain-containing domain -
  SynBMKMC1_RS02620 (SynBMKMC1_00558) - 504432..506069 (+) 1638 WP_186472611.1 AAA family ATPase -
  SynBMKMC1_RS02630 (SynBMKMC1_00560) - 506250..507026 (+) 777 WP_186472612.1 HAD family hydrolase -
  SynBMKMC1_RS02635 (SynBMKMC1_00561) recA 507179..508327 (+) 1149 WP_011932353.1 recombinase RecA Machinery gene
  SynBMKMC1_RS02640 (SynBMKMC1_00562) - 508344..508688 (-) 345 WP_011932354.1 DUF1815 family protein -
  SynBMKMC1_RS02645 (SynBMKMC1_00563) - 508763..509002 (-) 240 WP_186472613.1 DUF2839 domain-containing protein -
  SynBMKMC1_RS02650 (SynBMKMC1_00564) - 509040..510488 (-) 1449 WP_186472614.1 helicase -
  SynBMKMC1_RS02655 (SynBMKMC1_00565) - 510588..511493 (+) 906 WP_011932357.1 prephenate/arogenate dehydrogenase -
  SynBMKMC1_RS02660 (SynBMKMC1_00566) crtD 511477..512991 (-) 1515 WP_186472615.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40592.19 Da        Isoelectric Point: 7.1452

>NTDB_id=418575 SynBMKMC1_RS02635 WP_011932353.1 507179..508327(+) (recA) [Synechococcus sp. BMK-MC-1]
MPVEVKSSQSSGGDVRPGERDQALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDTIETLVRQKLTEGSEVTSNSMRPLAAAARSAATKSAAKGSEVQADVKTKGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=418575 SynBMKMC1_RS02635 WP_011932353.1 507179..508327(+) (recA) [Synechococcus sp. BMK-MC-1]
ATGCCAGTCGAAGTGAAATCCTCCCAGTCCTCCGGTGGAGATGTCCGCCCCGGTGAGCGTGATCAAGCGCTCAATCTCGT
GCTCGGGCAAATCGAGCGCAATTTCGGGAAGGGGTCGATCATGCGTCTTGGAGACGCCTCCCGAATGCGGGTGGAGACCA
TCTCCACCGGAGCGCTCACCCTCGACCTTGCCTTGGGCGGTGGTTACCCCAAAGGACGGGTTGTGGAGGTGTACGGGCCT
GAAAGTTCCGGTAAGACCACGCTGACTCTGCATGCCATCGCCGAGGTGCAGCGGCGTGGCGGTGTGGCGGCCTTCGTGGA
CGCTGAGCATGCCCTCGATCCCGTCTACGCCGCTTCGCTTGGCGTCGATATCGAGAATTTGTTGGTGTCGCAGCCCGACA
CCGGCGAAATGGCCCTGGAGATCGTCGATCAGCTCGTGCGCTCCGCTGCCGTTGACATCGTGGTGGTGGACTCGGTGGCG
GCCCTGACGCCTCGGGCCGAGATCGAAGGGGAGATGGGTGATCTGGCCGTGGGCTCCCAGGCGCGGTTGATGAGTCAGGC
CATGCGCAAGATCACAGGCAACATCGGAAAATCCGGTTGCACCGTGATTTTCCTCAACCAGTTGCGTTTGAAAATCGGCG
TGACCTATGGCAATCCGGAAACCACAACCGGTGGTAACGCCCTCAAGTTCTATGCCTCGGTGCGCCTCGACATCCGCCGC
ATTCAGACGCTGAAGCGCGGCACCGAGGAGTACGGGATTCGGGCCAAGGTGAAGGTGGCCAAAAACAAAGTGGCCCCGCC
CTTCCGCATCGCTGAATTCGACATCCTTTTCGGCCGTGGCATCAGCACGTTGGGATGCTTGCTGGATCTGGCCGAAGAAA
CCGGTGTTGTGACCCGCAAAGGAGCCTGGTACAGCTACGAAGGCGACAACATTGGCCAGGGGCGAGACAACACCATTGGC
TGGCTGGAACAGAATCCTGAGGCCAAGGACACGATCGAGACGTTGGTGCGACAGAAGCTCACCGAGGGCTCGGAAGTGAC
GTCCAATTCCATGCGACCCCTTGCCGCTGCTGCACGCTCCGCGGCCACGAAGTCCGCTGCCAAAGGGTCCGAGGTTCAGG
CCGATGTCAAAACCAAAGGGGCTGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.35

86.649

0.558
  recA Pseudomonas stutzeri DSM 10701

64.596

84.293

0.545
  recA Acinetobacter baumannii D1279779

63.975

84.293

0.539
  recA Glaesserella parasuis strain SC1401

62.08

85.602

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

84.293

0.529
  recA Vibrio cholerae strain A1552

62.733

84.293

0.529
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Neisseria gonorrhoeae strain FA1090

60.542

86.911

0.526
  recA Ralstonia pseudosolanacearum GMI1000

64.63

81.414

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.031

0.518
  recA Helicobacter pylori 26695

57.988

88.482

0.513
  recA Helicobacter pylori strain NCTC11637

57.988

88.482

0.513
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.126

0.505
  recA Streptococcus pneumoniae Rx1

56.805

88.482

0.503
  recA Streptococcus pneumoniae D39

56.805

88.482

0.503
  recA Streptococcus pneumoniae R6

56.805

88.482

0.503
  recA Streptococcus pneumoniae TIGR4

56.805

88.482

0.503
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

84.031

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

83.77

0.5
  recA Streptococcus mitis NCTC 12261

56.509

88.482

0.5
  recA Streptococcus mitis SK321

55.523

90.052

0.5
  recA Lactococcus lactis subsp. cremoris KW2

56.418

87.696

0.495
  recA Streptococcus mutans UA159

57.846

85.079

0.492
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

85.864

0.479
  recA Streptococcus pyogenes NZ131

55.963

85.602

0.479

Multiple sequence alignment