Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynTAK9802_RS01835 Genome accession   NZ_CP047937
Coordinates   344003..345127 (+) Length   374 a.a.
NCBI ID   WP_025362062.1    Uniprot ID   -
Organism   Synechococcus sp. TAK9802     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 339003..350127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynTAK9802_RS01810 (SynTAK9802_00373) - 339861..340322 (+) 462 WP_186497011.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynTAK9802_RS01815 (SynTAK9802_00374) - 340289..341320 (+) 1032 WP_186497012.1 LdpA C-terminal domain-containing domain -
  SynTAK9802_RS01820 (SynTAK9802_00375) - 341343..342983 (+) 1641 WP_186497013.1 AAA family ATPase -
  SynTAK9802_RS01830 (SynTAK9802_00377) - 343167..343916 (+) 750 WP_186497014.1 HAD family hydrolase -
  SynTAK9802_RS01835 (SynTAK9802_00378) recA 344003..345127 (+) 1125 WP_025362062.1 recombinase RecA Machinery gene
  SynTAK9802_RS01840 (SynTAK9802_00379) - 345130..345474 (-) 345 WP_186497015.1 DUF1815 family protein -
  SynTAK9802_RS01845 (SynTAK9802_00380) - 345545..345793 (-) 249 WP_114987291.1 DUF2839 domain-containing protein -
  SynTAK9802_RS01850 (SynTAK9802_00381) - 345829..347274 (-) 1446 WP_186497016.1 helicase -
  SynTAK9802_RS01855 (SynTAK9802_00382) - 347358..348239 (+) 882 WP_186497017.1 prephenate/arogenate dehydrogenase -
  SynTAK9802_RS01860 (SynTAK9802_00383) crtD 348223..349725 (-) 1503 WP_186497018.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39596.22 Da        Isoelectric Point: 6.5234

>NTDB_id=418554 SynTAK9802_RS01835 WP_025362062.1 344003..345127(+) (recA) [Synechococcus sp. TAK9802]
MPADMKSGASDPRSSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGPES
SGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDLVVVDSVAAL
TPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQ
TLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVVRKGAWYSYEGDNIGQGRDNTISWM
EENPDATATIETLVRQKLTEGSEVKANSMRPLAAAAKTAAADKSAPAKASEAAA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=418554 SynTAK9802_RS01835 WP_025362062.1 344003..345127(+) (recA) [Synechococcus sp. TAK9802]
ATGCCTGCAGATATGAAATCCGGCGCTTCCGATCCCCGTTCCTCCGGCGAGAGGGACAAGGCGCTGAACCTGGTGCTGGG
TCAGATCGAGCGCAACTTCGGCAAGGGATCGATCATGCGGTTGGGCGATGCCTCCCGCATGCGGGTGGAGACGATTTCCA
CCGGTGCGCTGACCCTTGACCTCGCCTTGGGTGGTGGTTACCCGAAGGGTCGTGTGGTGGAGATCTACGGCCCGGAAAGT
TCCGGTAAAACCACGCTCACCCTGCACGCGATTGCAGAAGTGCAGAAGCGTGGTGGTGTGGCGGCCTTCGTGGATGCGGA
GCATGCACTGGATCCCGTTTATGCCGCTTCTCTGGGCGTTGACGTCGAGAACCTGCTGGTCTCTCAGCCCGACACCGGCG
AGATGGCGCTGGAGATCGTTGATCAACTGGTGCGATCAGCAGCAGTGGATCTGGTCGTTGTCGACTCGGTGGCGGCCCTC
ACCCCTCGCGCTGAGATCGAAGGTGAGATGGGAGACCTGGCGGTTGGCAGTCAGGCGCGTCTGATGAGCCAGGCGATGCG
GAAGATCACCGGCAACATCGGCAAGTCGGGTTGCACCGTCATCTTCCTCAACCAGCTGCGTCTCAAGATTGGTGTGACCT
ACGGCAACCCGGAGACCACCACTGGAGGCAACGCGCTCAAGTTCTATGCCTCGGTTCGCCTCGACATCCGTCGGATTCAG
ACCCTCAAGAAGGGAACCGAAGAGTTCGGCATCAGGGCCAAGGTGAAAGTGGCGAAGAACAAGGTGGCGCCCCCTTTCCG
CATTGCCGAATTCGACATTCTCTTCGGCCGCGGCATCAGCACCCTGGGCTGTCTGCTGGATCTGGCTGAAGAAACGGGTG
TTGTTGTCCGCAAGGGCGCCTGGTACAGCTACGAGGGAGACAACATCGGTCAGGGCCGCGACAACACCATCTCCTGGATG
GAGGAGAACCCGGATGCAACAGCCACCATCGAAACGTTGGTGCGTCAGAAGCTGACAGAAGGTTCTGAGGTGAAGGCGAA
TTCGATGCGCCCCCTAGCCGCCGCTGCAAAGACGGCTGCTGCTGATAAGTCCGCTCCGGCCAAGGCTTCAGAGGCGGCGG
CCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.149

86.096

0.57
  recA Acinetobacter baumannii D1279779

65.217

86.096

0.561
  recA Neisseria gonorrhoeae MS11

60.29

92.246

0.556
  recA Neisseria gonorrhoeae strain FA1090

60.29

92.246

0.556
  recA Neisseria gonorrhoeae MS11

60.29

92.246

0.556
  recA Pseudomonas stutzeri DSM 10701

64.596

86.096

0.556
  recA Ralstonia pseudosolanacearum GMI1000

65.916

83.155

0.548
  recA Vibrio cholerae strain A1552

62.422

86.096

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

86.096

0.537
  recA Glaesserella parasuis strain SC1401

61.92

86.364

0.535
  recA Helicobacter pylori strain NCTC11637

58.876

90.374

0.532
  recA Helicobacter pylori 26695

58.876

90.374

0.532
  recA Streptococcus mitis NCTC 12261

57.225

92.513

0.529
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

85.829

0.524
  recA Streptococcus pneumoniae D39

58.333

89.84

0.524
  recA Streptococcus pneumoniae Rx1

58.333

89.84

0.524
  recA Streptococcus pneumoniae R6

58.333

89.84

0.524
  recA Streptococcus pneumoniae TIGR4

58.333

89.84

0.524
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

87.968

0.521
  recA Streptococcus mitis SK321

58.209

89.572

0.521
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

85.829

0.519
  recA Lactococcus lactis subsp. cremoris KW2

57.313

89.572

0.513
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.233

91.979

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

85.561

0.508
  recA Streptococcus mutans UA159

58.154

86.898

0.505
  recA Streptococcus pyogenes NZ131

56.269

87.433

0.492

Multiple sequence alignment