Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynBIOSU31_RS02340 Genome accession   NZ_CP047936
Coordinates   489722..490864 (+) Length   380 a.a.
NCBI ID   WP_186491775.1    Uniprot ID   -
Organism   Synechococcus sp. BIOS-U3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484722..495864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynBIOSU31_RS02315 (SynBIOSU31_00510) - 485401..485862 (+) 462 WP_186491772.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynBIOSU31_RS02320 (SynBIOSU31_00511) - 485937..486908 (+) 972 WP_255477311.1 LdpA C-terminal domain-containing domain -
  SynBIOSU31_RS02325 (SynBIOSU31_00512) - 486978..488612 (+) 1635 WP_186491773.1 AAA family ATPase -
  SynBIOSU31_RS02335 (SynBIOSU31_00514) - 488805..489569 (+) 765 WP_370593656.1 HAD family hydrolase -
  SynBIOSU31_RS02340 (SynBIOSU31_00515) recA 489722..490864 (+) 1143 WP_186491775.1 recombinase RecA Machinery gene
  SynBIOSU31_RS02345 (SynBIOSU31_00516) - 490865..491209 (-) 345 WP_186491777.1 DUF1815 family protein -
  SynBIOSU31_RS02350 (SynBIOSU31_00517) - 491286..491525 (-) 240 WP_186491779.1 DUF2839 domain-containing protein -
  SynBIOSU31_RS02355 (SynBIOSU31_00518) - 491566..493008 (-) 1443 WP_186491780.1 helicase -
  SynBIOSU31_RS02360 (SynBIOSU31_00519) - 493093..494013 (+) 921 WP_186492786.1 prephenate/arogenate dehydrogenase -
  SynBIOSU31_RS02365 (SynBIOSU31_00520) crtD 493997..495511 (-) 1515 WP_186491781.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40238.86 Da        Isoelectric Point: 7.1446

>NTDB_id=418544 SynBIOSU31_RS02340 WP_186491775.1 489722..490864(+) (recA) [Synechococcus sp. BIOS-U3-1]
MPADVKASQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETVSTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVKSNSMRPLAAAARSAAAKPVDKSAVVASPSKDAA

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=418544 SynBIOSU31_RS02340 WP_186491775.1 489722..490864(+) (recA) [Synechococcus sp. BIOS-U3-1]
ATGCCAGCCGACGTGAAAGCCTCCCAGTCCTCCGGTGGAGATGTCCGCCCCGGTGAGCGCGACAAAGCGCTCAATCTCGT
GCTCGGTCAAATCGAGCGTAACTTCGGCAAGGGTTCGATCATGCGTCTCGGGGACGCATCCAGGATGCGGGTGGAAACAG
TTTCCACAGGAGCCCTAACTCTTGATCTCGCATTAGGTGGTGGGTATCCCAAGGGGCGTGTCGTTGAGGTCTACGGGCCC
GAAAGTTCCGGCAAGACCACGCTGACGTTGCATGCCATTGCCGAGGTTCAGCGCAACGGAGGCGTCGCAGCCTTTGTTGA
TGCAGAGCATGCTCTTGACCCGGTTTATGCCGCATCCCTGGGAGTGGATGTGGAAAATCTGCTGGTATCTCAGCCGGATA
CAGGCGAGATGGCGCTTGAGATCGTGGATCAGTTGGTCCGTTCCGCAGCTGTCGACATCGTTGTGGTCGACTCTGTGGCC
GCTCTTACGCCCCGTGCCGAGATCGAGGGTGAGATGGGCGATCTTGCAGTAGGCAGTCAGGCACGTCTCATGAGCCAAGC
GATGCGCAAGATCACCGGCAATATCGGCAAGTCTGGTTGCACGGTGATTTTCCTCAACCAGCTGCGTCTCAAGATTGGTG
TCACCTACGGCAATCCAGAAACCACTACTGGTGGTAACGCTCTCAAGTTCTATGCCTCAGTGCGGCTTGACATTCGTCGT
ATTCAGACGCTTAAGCGCGGCACCGAGGAGTACGGCATTCGCGCCAAGGTGAAGGTGGCCAAAAACAAGGTCGCTCCTCC
CTTCCGAATCGCCGAATTCGACATTCTCTTTGGTCGAGGGATCAGCACGCTGGGTTGTGTGCTCGATCTGGCTGAGGAGA
CGGGTGTCGTCACTCGCAAGGGTGCCTGGTACAGCTATGAGGGCGACAACATCGGGCAGGGTCGTGACAACACCATTGGT
TGGCTGGAGCAAAATCCGGAAGCCAAGGACGCCATTGAAGTGTTGGTGCGGCAGAAGCTGACGGAAGGTTCGGAAGTTAA
GTCCAATTCCATGCGTCCTCTTGCTGCTGCTGCACGCTCGGCTGCTGCTAAGCCTGTCGATAAGTCTGCTGTGGTTGCTT
CGCCGTCGAAGGACGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

84.737

0.553
  recA Pseudomonas stutzeri DSM 10701

64.596

84.737

0.547
  recA Acinetobacter baumannii D1279779

63.975

84.737

0.542
  recA Ralstonia pseudosolanacearum GMI1000

65.273

81.842

0.534
  recA Glaesserella parasuis strain SC1401

61.774

86.053

0.532
  recA Neisseria gonorrhoeae strain FA1090

60.542

87.368

0.529
  recA Neisseria gonorrhoeae MS11

60.542

87.368

0.529
  recA Neisseria gonorrhoeae MS11

60.542

87.368

0.529
  recA Bacillus subtilis subsp. subtilis str. 168

59.94

87.368

0.524
  recA Vibrio cholerae strain A1552

61.801

84.737

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

84.737

0.524
  recA Helicobacter pylori 26695

58.284

88.947

0.518
  recA Helicobacter pylori strain NCTC11637

58.284

88.947

0.518
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.663

86.579

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.502

84.474

0.503
  recA Streptococcus pneumoniae D39

57.015

88.158

0.503
  recA Streptococcus pneumoniae Rx1

57.015

88.158

0.503
  recA Streptococcus pneumoniae R6

57.015

88.158

0.503
  recA Streptococcus pneumoniae TIGR4

57.015

88.158

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.211

0.5
  recA Streptococcus mitis NCTC 12261

56.716

88.158

0.5
  recA Streptococcus mitis SK321

56.587

87.895

0.497
  recA Lactococcus lactis subsp. cremoris KW2

56.418

88.158

0.497
  recA Streptococcus mutans UA159

57.538

85.526

0.492
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.158

0.479
  recA Streptococcus pyogenes NZ131

55.657

86.053

0.479

Multiple sequence alignment