Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynA1560_RS02280 Genome accession   NZ_CP047933
Coordinates   464377..465516 (+) Length   379 a.a.
NCBI ID   WP_186470090.1    Uniprot ID   -
Organism   Synechococcus sp. A15-60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459377..470516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynA1560_RS02255 (SynA1560_00474) - 460007..460468 (+) 462 WP_186470087.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynA1560_RS02260 (SynA1560_00475) - 460481..461545 (+) 1065 WP_255477024.1 LdpA C-terminal domain-containing domain -
  SynA1560_RS02265 (SynA1560_00476) - 461584..463266 (+) 1683 WP_186470088.1 AAA family ATPase -
  SynA1560_RS02275 (SynA1560_00478) - 463460..464224 (+) 765 WP_255477025.1 HAD family hydrolase -
  SynA1560_RS02280 (SynA1560_00479) recA 464377..465516 (+) 1140 WP_186470090.1 recombinase RecA Machinery gene
  SynA1560_RS02285 (SynA1560_00480) - 465517..465867 (-) 351 WP_186501550.1 DUF1815 family protein -
  SynA1560_RS02290 (SynA1560_00481) - 465943..466182 (-) 240 WP_186470091.1 DUF2839 domain-containing protein -
  SynA1560_RS02295 (SynA1560_00482) - 466222..467664 (-) 1443 WP_186470092.1 helicase -
  SynA1560_RS02300 (SynA1560_00484) - 467766..468668 (+) 903 WP_186501073.1 prephenate/arogenate dehydrogenase -
  SynA1560_RS02305 (SynA1560_00485) crtD 468652..470166 (-) 1515 WP_186470094.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40196.87 Da        Isoelectric Point: 7.8288

>NTDB_id=418533 SynA1560_RS02280 WP_186470090.1 464377..465516(+) (recA) [Synechococcus sp. A15-60]
MPADVKTSQSSGGDVRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKEAIEVVVRQKLTEGSEVTSNSMRPLAAAARSAASKPAAKLDTAPSVKGAA

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=418533 SynA1560_RS02280 WP_186470090.1 464377..465516(+) (recA) [Synechococcus sp. A15-60]
ATGCCTGCCGACGTGAAAACCTCCCAATCCTCCGGCGGAGATGTCCGCCCGGGTGAGCGCGATAAAGCGCTCAACCTTGT
GCTCGGTCAGATCGAACGCAACTTCGGCAAGGGCTCAATCATGCGCCTTGGAGATGCCTCCAGGATGCGGGTTGAAACCA
TCTCCACCGGTGCCCTCACGCTTGATCTTGCTTTGGGTGGTGGGTATCCCAAAGGCCGTGTGGTCGAGGTGTATGGCCCC
GAGAGCTCCGGTAAAACGACGCTCACTCTTCATGCCATCGCTGAGGTGCAGCGCAGGGGTGGTGTTGCGGCCTTCGTCGA
CGCCGAGCATGCGCTCGATCCGGTTTATGCAGCGTCGCTCGGCGTTGATATTGAAAATCTGCTGGTCTCGCAGCCTGACA
CCGGCGAGATGGCTCTGGAGATCGTTGATCAGCTCGTGCGTTCTGCTGCCGTCGACATCGTGGTGGTCGACTCCGTTGCG
GCTCTCACGCCCCGGGCCGAGATTGAAGGAGAAATGGGTGATCTGGCGGTGGGCAGTCAGGCCCGCCTGATGAGCCAGGC
GATGCGGAAGATCACCGGCAACATCGGTAAATCCGGTTGCACCGTGATCTTCCTCAACCAGTTGCGCCTGAAGATCGGTG
TGACCTACGGCAACCCAGAGACCACCACCGGTGGCAACGCGCTCAAGTTCTACGCCTCGGTACGTCTTGATATCCGCCGC
ATTCAGACGCTCAAGCGTGGAACAGAGGAATACGGCATCCGGGCCAAGGTGAAGGTGGCCAAAAACAAGGTGGCCCCGCC
CTTCCGCATCGCAGAATTCGACATTCTCTTCGGCCGGGGGATCAGCACGCTTGGCTGTCTGCTCGACCTCGCTGAAGAAA
CCGGTGTCGTCACCCGTAAAGGCGCCTGGTACAGCTATGAAGGCGACAACATTGGTCAGGGTCGTGACAACACGATCGGC
TGGCTGGAGCAAAACCCTGAGGCCAAGGAGGCCATTGAAGTGGTGGTGCGTCAGAAGTTGACGGAAGGCTCGGAAGTTAC
CTCCAACTCCATGCGACCACTGGCAGCGGCTGCGCGCTCTGCAGCATCCAAGCCTGCAGCCAAGTTAGACACTGCTCCGT
CAGTCAAGGGTGCCGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

87.335

0.567
  recA Acinetobacter baumannii D1279779

64.596

84.96

0.549
  recA Pseudomonas stutzeri DSM 10701

64.596

84.96

0.549
  recA Vibrio cholerae strain A1552

62.733

84.96

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.733

84.96

0.533
  recA Glaesserella parasuis strain SC1401

61.468

86.28

0.53
  recA Ralstonia pseudosolanacearum GMI1000

64.63

82.058

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.241

87.599

0.528
  recA Neisseria gonorrhoeae MS11

60.241

87.599

0.528
  recA Neisseria gonorrhoeae MS11

60.241

87.599

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.187

90.237

0.525
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

84.697

0.522
  recA Helicobacter pylori 26695

57.988

89.182

0.517
  recA Helicobacter pylori strain NCTC11637

57.988

89.182

0.517
  recA Streptococcus pneumoniae R6

56.805

89.182

0.507
  recA Streptococcus pneumoniae Rx1

56.805

89.182

0.507
  recA Streptococcus pneumoniae D39

56.805

89.182

0.507
  recA Streptococcus pneumoniae TIGR4

56.805

89.182

0.507
  recA Streptococcus mitis SK321

55.814

90.765

0.507
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

84.697

0.507
  recA Streptococcus mitis NCTC 12261

56.509

89.182

0.504
  recA Latilactobacillus sakei subsp. sakei 23K

59.375

84.433

0.501
  recA Lactococcus lactis subsp. cremoris KW2

56.418

88.391

0.499
  recA Streptococcus mutans UA159

57.846

85.752

0.496
  recA Streptococcus pyogenes NZ131

55.963

86.28

0.483
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.595

83.377

0.48

Multiple sequence alignment