Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynRCC2555_RS02360 Genome accession   NZ_CP047932
Coordinates   494376..495563 (+) Length   395 a.a.
NCBI ID   WP_130128409.1    Uniprot ID   -
Organism   Synechococcus sp. WH 8101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 489376..500563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynRCC2555_RS02335 (SynRCC2555_00489) - 490088..490549 (+) 462 WP_130128407.1 NAD(P)H-quinone oxidoreductase subunit N -
  SynRCC2555_RS02340 (SynRCC2555_00490) - 490556..491602 (+) 1047 WP_254428013.1 LdpA C-terminal domain-containing domain -
  SynRCC2555_RS02345 (SynRCC2555_00491) - 491639..493282 (+) 1644 WP_130128408.1 AAA family ATPase -
  SynRCC2555_RS02355 (SynRCC2555_00493) - 493469..494245 (+) 777 WP_174719488.1 HAD family hydrolase -
  SynRCC2555_RS02360 (SynRCC2555_00494) recA 494376..495563 (+) 1188 WP_130128409.1 recombinase RecA Machinery gene
  SynRCC2555_RS02365 (SynRCC2555_00495) - 495552..495899 (-) 348 WP_130128410.1 DUF1815 family protein -
  SynRCC2555_RS02370 - 495963..496202 (-) 240 WP_130128411.1 DUF2839 domain-containing protein -
  SynRCC2555_RS02375 (SynRCC2555_00497) - 496243..497691 (-) 1449 WP_130128412.1 helicase -
  SynRCC2555_RS02380 (SynRCC2555_00498) - 497774..498703 (+) 930 WP_130130303.1 prephenate/arogenate dehydrogenase -
  SynRCC2555_RS02385 (SynRCC2555_00499) crtD 498663..500195 (-) 1533 WP_130128413.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 41459.13 Da        Isoelectric Point: 7.1443

>NTDB_id=418523 SynRCC2555_RS02360 WP_130128409.1 494376..495563(+) (recA) [Synechococcus sp. WH 8101]
MPLDVKASPTSGSDPRPGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETIPTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTIG
WLEQNPDAKDAIEALVRQKLTEGSEVTANSMRPLAAAARSAASQASSAAATSAPSAASNDKPAAANKPGAASSAA

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=418523 SynRCC2555_RS02360 WP_130128409.1 494376..495563(+) (recA) [Synechococcus sp. WH 8101]
ATGCCACTCGACGTGAAAGCTTCTCCCACCTCCGGCTCCGACCCCCGTCCAGGTGAGCGCGACAAAGCGCTGAATCTTGT
GCTCGGCCAGATCGAGCGCAATTTCGGCAAAGGGTCGATCATGCGCCTCGGGGATGCGTCCCGGATGCGGGTCGAGACCA
TTCCCACCGGTGCTCTCACCCTGGATCTCGCCCTCGGTGGCGGCTATCCGAAGGGGCGTGTGGTGGAGGTGTATGGACCG
GAAAGCTCCGGTAAGACCACGCTGACGCTCCATGCGATCGCCGAGGTGCAGCGTCGTGGTGGTGTGGCCGCCTTCGTGGA
TGCGGAGCATGCTCTAGATCCGGTGTACGCCGCCTCCCTGGGCGTCGACATCGAGAACCTGCTCGTCTCCCAGCCCGACA
CCGGCGAGATGGCCCTGGAGATTGTCGATCAGTTGGTGCGATCCGCGGCTGTCGATATCGTCGTGGTCGACTCGGTGGCG
GCCCTCACGCCGCGGGCCGAGATTGAGGGTGAGATGGGCGATCTGGCCGTGGGCAGCCAGGCCCGCCTGATGAGCCAGGC
GATGCGCAAGATCACCGGCAACATCGGCAAATCCGGTTGCACGGTGATTTTCCTCAACCAGCTGCGACTCAAGATCGGTG
TCACCTATGGCAATCCGGAAACGACCACCGGCGGCAATGCCCTCAAGTTCTATGCATCGGTGCGTTTGGATATCCGTCGC
ATTCAGACGCTCAAGCGCGGCACTGAGGAATACGGGATCCGCGCGAAGGTGAAAGTGGCGAAGAACAAGGTGGCGCCACC
CTTCCGAATCGCCGAATTCGACATCCTTTTCGGCCGGGGGATCAGCACCCTTGGTTGCCTGCTCGATCTGGCGGAAGAAA
CCGGTGTGGTGATTCGCAAGGGGGCTTGGTACAGCTACGAGGGCGACAACATCGGGCAGGGCCGCGACAACACCATCGGC
TGGCTGGAGCAGAACCCCGACGCGAAGGACGCGATCGAAGCGCTGGTGCGTCAGAAACTCACGGAGGGGTCCGAGGTGAC
CGCCAATTCGATGCGTCCCCTCGCTGCGGCAGCACGCAGTGCCGCCAGCCAAGCGTCTTCGGCAGCTGCGACGTCTGCAC
CGTCTGCGGCTAGCAACGACAAACCGGCTGCCGCAAACAAACCGGGCGCCGCCTCGTCAGCTGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

83.797

0.544
  recA Acinetobacter baumannii D1279779

63.975

81.519

0.522
  recA Pseudomonas stutzeri DSM 10701

63.975

81.519

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

81.519

0.506
  recA Vibrio cholerae strain A1552

62.112

81.519

0.506
  recA Neisseria gonorrhoeae MS11

60.241

84.051

0.506
  recA Neisseria gonorrhoeae MS11

60.241

84.051

0.506
  recA Neisseria gonorrhoeae strain FA1090

60.241

84.051

0.506
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

81.266

0.506
  recA Glaesserella parasuis strain SC1401

61.043

82.532

0.504
  recA Ralstonia pseudosolanacearum GMI1000

63.987

78.734

0.504
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.187

86.582

0.504
  recA Helicobacter pylori strain NCTC11637

57.988

85.57

0.496
  recA Helicobacter pylori 26695

57.988

85.57

0.496
  recA Streptococcus mitis NCTC 12261

54.93

89.873

0.494
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.813

81.266

0.486
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

81.013

0.484
  recA Streptococcus pneumoniae D39

56.845

85.063

0.484
  recA Streptococcus pneumoniae R6

56.845

85.063

0.484
  recA Streptococcus pneumoniae TIGR4

56.845

85.063

0.484
  recA Streptococcus pneumoniae Rx1

56.845

85.063

0.484
  recA Lactococcus lactis subsp. cremoris KW2

56.716

84.81

0.481
  recA Streptococcus mitis SK321

56.587

84.557

0.478
  recA Streptococcus mutans UA159

57.538

82.278

0.473
  recA Streptococcus pyogenes NZ131

55.963

82.785

0.463
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.962

80

0.456

Multiple sequence alignment