Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SynA1528_RS10685 Genome accession   NZ_CP047931
Coordinates   1855586..1856713 (-) Length   375 a.a.
NCBI ID   WP_186586723.1    Uniprot ID   -
Organism   Synechococcus sp. A15-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850586..1861713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SynA1528_RS10660 (SynA1528_02294) crtD 1850971..1852473 (+) 1503 WP_186586719.1 C-3',4' desaturase CrtD -
  SynA1528_RS10665 (SynA1528_02295) - 1852463..1853338 (-) 876 WP_186588406.1 prephenate/arogenate dehydrogenase -
  SynA1528_RS10670 (SynA1528_02296) - 1853421..1854866 (+) 1446 WP_186586720.1 helicase -
  SynA1528_RS10675 - 1854917..1855165 (+) 249 WP_186586721.1 DUF2839 domain-containing protein -
  SynA1528_RS10680 (SynA1528_02298) - 1855228..1855584 (+) 357 WP_186586722.1 DUF1815 family protein -
  SynA1528_RS10685 (SynA1528_02299) recA 1855586..1856713 (-) 1128 WP_186586723.1 recombinase RecA Machinery gene
  SynA1528_RS10690 (SynA1528_02300) - 1856800..1857549 (-) 750 WP_186586724.1 HAD family hydrolase -
  SynA1528_RS10700 (SynA1528_02302) - 1857722..1859365 (-) 1644 WP_186588412.1 AAA family ATPase -
  SynA1528_RS10705 (SynA1528_02303) - 1859389..1860435 (-) 1047 WP_186586725.1 LdpA C-terminal domain-containing domain -
  SynA1528_RS10710 (SynA1528_02304) - 1860402..1860863 (-) 462 WP_186586726.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39705.39 Da        Isoelectric Point: 5.9881

>NTDB_id=418517 SynA1528_RS10685 WP_186586723.1 1855586..1856713(-) (recA) [Synechococcus sp. A15-28]
MPAEMKSAASGSDPRSSGERDKALNLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEIYGP
ESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLVRSAAVDIVVIDSVA
ALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKKGTEEFGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEETGVVIRKGAWYSYEGDNIGQGRDNTIT
WMEENPEAAVTIEQLVRQKLVEGSEVKANSMKPLAAAARSAASSAPKAAADEAAA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=418517 SynA1528_RS10685 WP_186586723.1 1855586..1856713(-) (recA) [Synechococcus sp. A15-28]
ATGCCTGCAGAGATGAAATCCGCCGCCTCCGGTTCCGATCCCCGTTCCTCCGGTGAGCGCGACAAGGCGCTGAATCTGGT
GCTCGGCCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGCCTTGGCGACGCCTCCCGGATGCGGGTGGAAACCA
TCTCCACCGGTGCCCTCACCCTCGATCTGGCCCTGGGGGGCGGCTATCCCAAGGGACGTGTCGTTGAGATCTACGGACCG
GAGAGTTCCGGTAAGACCACCCTCACCCTGCATGCCATTGCTGAGGTGCAGAAGCGTGGTGGTGTTGCCGCTTTCGTCGA
CGCTGAGCATGCCCTCGATCCGGTTTACGCCGCCTCGCTCGGCGTGGACGTGGAAAACCTGCTGGTGTCCCAGCCGGACA
CCGGTGAGATGGCGCTGGAGATCGTTGACCAGCTGGTCCGCTCCGCGGCGGTGGACATCGTGGTGATCGACTCGGTGGCT
GCCCTGACGCCGCGGGCTGAGATCGAAGGCGAGATGGGGGATCTGGCCGTCGGAAGTCAGGCCCGCCTGATGAGTCAGGC
GATGCGGAAAATCACCGGCAACATCGGCAAATCCGGTTGCACGGTGATCTTCCTCAACCAGCTGCGCCTCAAGATCGGCG
TCACCTACGGCAACCCTGAAACCACCACAGGCGGCAACGCACTCAAGTTCTATGCCTCCGTTCGACTGGACATCCGCCGG
ATCCAGACCTTGAAGAAAGGGACGGAGGAATTCGGGATCCGGGCCAAGGTCAAGGTGGCCAAAAACAAGGTGGCTCCGCC
GTTCCGCATCGCGGAATTCGACATCCTGTTCGGTCGCGGCATCAGCACCCTGGGGTGTCTGCTGGATCTGGCGGAAGAAA
CCGGTGTGGTCATCCGCAAGGGGGCCTGGTACAGCTATGAGGGCGACAACATCGGTCAGGGGCGGGACAACACCATCACC
TGGATGGAGGAGAACCCCGAGGCAGCCGTCACCATCGAGCAGCTGGTGCGTCAGAAGCTTGTTGAGGGGTCTGAAGTGAA
GGCCAACTCGATGAAACCCCTTGCTGCAGCGGCTCGATCTGCGGCGAGCTCAGCTCCCAAGGCCGCGGCGGACGAGGCTG
CGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.325

86.133

0.563
  recA Acinetobacter baumannii D1279779

64.706

86.133

0.557
  recA Pseudomonas stutzeri DSM 10701

64.706

86.133

0.557
  recA Ralstonia pseudosolanacearum GMI1000

66.559

82.933

0.552
  recA Neisseria gonorrhoeae MS11

59.71

92

0.549
  recA Neisseria gonorrhoeae MS11

59.71

92

0.549
  recA Neisseria gonorrhoeae strain FA1090

59.71

92

0.549
  recA Glaesserella parasuis strain SC1401

62.539

86.133

0.539
  recA Vibrio cholerae strain A1552

62.539

86.133

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

86.133

0.539
  recA Streptococcus mitis NCTC 12261

56.857

93.333

0.531
  recA Helicobacter pylori 26695

58.58

90.133

0.528
  recA Helicobacter pylori strain NCTC11637

58.58

90.133

0.528
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.878

87.733

0.525
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.308

86.667

0.523
  recA Bacillus subtilis subsp. subtilis str. 168

60.748

85.6

0.52
  recA Streptococcus pneumoniae D39

58.036

89.6

0.52
  recA Streptococcus pneumoniae Rx1

58.036

89.6

0.52
  recA Streptococcus pneumoniae R6

58.036

89.6

0.52
  recA Streptococcus pneumoniae TIGR4

58.036

89.6

0.52
  recA Streptococcus mitis SK321

57.612

89.333

0.515
  recA Lactococcus lactis subsp. cremoris KW2

57.015

89.333

0.509
  recA Latilactobacillus sakei subsp. sakei 23K

59.133

86.133

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.627

88.533

0.501
  recA Streptococcus mutans UA159

57.846

86.667

0.501
  recA Streptococcus pyogenes NZ131

55.657

87.2

0.485

Multiple sequence alignment