Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E3S76_RS03795 Genome accession   NZ_CP047849
Coordinates   759010..760053 (-) Length   347 a.a.
NCBI ID   WP_160203719.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 754010..765053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S76_RS03780 (E3S76_03780) - 755614..756411 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  E3S76_RS03785 (E3S76_03785) - 756585..756800 (+) 216 WP_000026308.1 hypothetical protein -
  E3S76_RS03790 (E3S76_03790) rny 757097..758656 (-) 1560 WP_001050785.1 ribonuclease Y -
  E3S76_RS03795 (E3S76_03795) recA 759010..760053 (-) 1044 WP_160203719.1 recombinase RecA Machinery gene
  E3S76_RS03800 (E3S76_03800) - 760218..761369 (-) 1152 WP_000020361.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  E3S76_RS03805 (E3S76_03805) pgsA 761596..762174 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E3S76_RS03810 (E3S76_03810) - 762208..762600 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  E3S76_RS03815 (E3S76_03815) - 762619..763446 (-) 828 WP_000214890.1 YmfK family protein -
  E3S76_RS03820 (E3S76_03820) ymfI 763551..764255 (-) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37714.56 Da        Isoelectric Point: 4.7920

>NTDB_id=417765 E3S76_RS03795 WP_160203719.1 759010..760053(-) (recA) [Staphylococcus aureus strain UP_403]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNDERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=417765 E3S76_RS03795 WP_160203719.1 759010..760053(-) (recA) [Staphylococcus aureus strain UP_403]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
ACGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAATCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.435

95.389

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

70.206

97.695

0.686
  recA Streptococcus pneumoniae TIGR4

65.23

100

0.654
  recA Streptococcus pneumoniae D39

65.23

100

0.654
  recA Streptococcus pneumoniae R6

65.23

100

0.654
  recA Streptococcus pneumoniae Rx1

65.23

100

0.654
  recA Streptococcus mitis SK321

64.841

100

0.648
  recA Streptococcus pyogenes NZ131

68.085

94.813

0.646
  recA Streptococcus mutans UA159

63.714

100

0.643
  recA Acinetobacter baumannii D1279779

64.08

100

0.643
  recA Acinetobacter baylyi ADP1

63.977

100

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.192

97.695

0.637
  recA Streptococcus mitis NCTC 12261

66.366

95.965

0.637
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Neisseria gonorrhoeae strain FA1090

64.897

97.695

0.634
  recA Neisseria gonorrhoeae MS11

64.897

97.695

0.634
  recA Helicobacter pylori 26695

63.93

98.271

0.628
  recA Helicobacter pylori strain NCTC11637

63.93

98.271

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Vibrio cholerae strain A1552

65.337

93.948

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.337

93.948

0.614
  recA Ralstonia pseudosolanacearum GMI1000

65.287

90.49

0.591
  recA Pseudomonas stutzeri DSM 10701

60.714

96.83

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.389

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.931

0.565
  recA Glaesserella parasuis strain SC1401

60.372

93.084

0.562

Multiple sequence alignment