Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGMK_RS03770 Genome accession   NC_015734
Coordinates   787425..788573 (-) Length   382 a.a.
NCBI ID   WP_013103786.1    Uniprot ID   D5T545
Organism   Leuconostoc sp. C2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 782425..793573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMK_RS03750 (LGMK_03825) - 783119..784000 (-) 882 WP_013103790.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  LGMK_RS03755 (LGMK_03830) - 784098..785453 (-) 1356 WP_013103789.1 cell wall metabolism sensor histidine kinase WalK -
  LGMK_RS03760 (LGMK_03835) - 785528..786442 (-) 915 WP_013103788.1 phosphate ABC transporter substrate-binding protein -
  LGMK_RS03765 (LGMK_03840) - 786622..787311 (-) 690 WP_013103787.1 response regulator transcription factor -
  LGMK_RS03770 (LGMK_03845) recA 787425..788573 (-) 1149 WP_013103786.1 recombinase RecA Machinery gene
  LGMK_RS03775 (LGMK_03850) pgsA 788706..789287 (-) 582 WP_013103785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LGMK_RS03780 (LGMK_03855) - 789297..790178 (-) 882 WP_013103784.1 RodZ family helix-turn-helix domain-containing protein -
  LGMK_RS03785 (LGMK_03860) yfmH 790192..791463 (-) 1272 WP_013103783.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LGMK_RS03790 (LGMK_03865) yfmF 791467..792729 (-) 1263 WP_013975121.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41123.57 Da        Isoelectric Point: 4.5898

>NTDB_id=41691 LGMK_RS03770 WP_013103786.1 787425..788573(-) (recA) [Leuconostoc sp. C2]
MVTKKTTKKDDKDSQAKGRKAALDEALKKIEKNFGKGSVMVLGDNALTQVETYPSGSVKLDVALGVGGYPKGRIIEVYGP
ESSGKTTIALHAVAEVQKAGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGAEQEIIRKAGAFYYYNDIKVGQGREKAKE
FLDAPENAEMRQEIYTKVRDAFGIGDGDSSEMLESDDVSDLDQTDTLELVSDDDDLTDEPIV

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=41691 LGMK_RS03770 WP_013103786.1 787425..788573(-) (recA) [Leuconostoc sp. C2]
ATGGTAACTAAAAAAACGACTAAAAAAGATGATAAAGACAGTCAAGCAAAAGGTCGCAAAGCAGCATTAGATGAAGCGCT
AAAGAAAATAGAAAAAAACTTTGGTAAGGGCTCTGTTATGGTATTGGGAGACAATGCACTAACACAGGTTGAAACTTATC
CTTCAGGCTCAGTTAAACTAGATGTTGCATTAGGCGTTGGTGGCTACCCAAAAGGCCGTATTATTGAAGTTTATGGACCA
GAATCATCTGGTAAAACGACAATTGCCTTACATGCTGTTGCAGAAGTACAGAAAGCAGGCGGTACAGCGGCTTATATTGA
TGCTGAAAATGCTTTGGATGTTAAATATGCCGAAGCATTGGGTGTAAAAAAAGATGAATTATTGCTATCACAACCAGATA
CTGGTGAACAAGGGTTAGAAATTGCTGATGCGCTAGTTCAATCAGGCGCTGTAGACATGATTGTTGTTGATTCCGTTGCC
GCGTTGGTACCTCGTGCCGAAATTGAAGGTGAAATGGGCGATTCTCATGTTGGATTACAAGCACGTCTCATGAGCCAAGC
GTTACGTAAATTGGCAGGTACACTAAATCGTACAGGAACAATTGCTATTTTTATTAATCAAATTCGTGAAAAAATTGGCG
TGATGTTTGGTAATCCCGAAACAACACCTGGCGGCCGTGCATTGAAATTTTATTCAACAATTCGTTTAGAAGTTCGTCGT
TCAACTCAAATTAAAGATGGTACTGATGTGACCGGAAATTTAACAAAGGTTAAGGTCGTAAAGAATAAGGTAGCACCACC
ATTCAAAGTTGCTGAAGTTGATATTATGTATGGTAAGGGAATCTCTCAGACAGGTGAAATACTAGATCTCGGTGCGGAAC
AAGAAATCATTAGGAAAGCCGGTGCTTTTTATTATTATAATGACATTAAAGTAGGTCAAGGTCGTGAAAAAGCTAAGGAA
TTTTTGGATGCACCTGAAAATGCCGAAATGAGACAGGAAATTTATACCAAAGTACGTGATGCTTTTGGTATAGGAGATGG
TGATTCATCAGAGATGTTAGAGTCAGATGATGTGTCTGATTTAGATCAGACGGATACACTAGAACTAGTATCTGATGACG
ATGATTTAACAGATGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5T545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

72.271

88.743

0.641
  recA Streptococcus mitis NCTC 12261

63.102

97.906

0.618
  recA Streptococcus mitis SK321

63.102

97.906

0.618
  recA Streptococcus pneumoniae D39

63.488

96.073

0.61
  recA Streptococcus pneumoniae Rx1

63.488

96.073

0.61
  recA Streptococcus pneumoniae R6

63.488

96.073

0.61
  recA Streptococcus pneumoniae TIGR4

63.488

96.073

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

70.552

85.34

0.602
  recA Streptococcus mutans UA159

63.26

94.764

0.599
  recA Lactococcus lactis subsp. cremoris KW2

64.672

91.885

0.594
  recA Streptococcus pyogenes NZ131

64.928

90.314

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.397

82.461

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.671

90.576

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.012

90.052

0.531
  recA Acinetobacter baumannii D1279779

58.309

89.791

0.524
  recA Glaesserella parasuis strain SC1401

53.639

97.12

0.521
  recA Acinetobacter baylyi ADP1

60.802

84.817

0.516
  recA Pseudomonas stutzeri DSM 10701

56.977

90.052

0.513
  recA Neisseria gonorrhoeae MS11

61.199

82.984

0.508
  recA Neisseria gonorrhoeae strain FA1090

61.199

82.984

0.508
  recA Neisseria gonorrhoeae MS11

61.199

82.984

0.508
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.327

85.602

0.508
  recA Vibrio cholerae strain A1552

59.938

84.293

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.938

84.293

0.505
  recA Helicobacter pylori strain NCTC11637

56.442

85.34

0.482
  recA Helicobacter pylori 26695

56.442

85.34

0.482

Multiple sequence alignment