Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   E3S88_RS04560 Genome accession   NZ_CP047792
Coordinates   925023..926066 (+) Length   347 a.a.
NCBI ID   WP_000368166.1    Uniprot ID   P68845
Organism   Staphylococcus aureus strain UP_794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920023..931066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS04535 (E3S88_04535) ymfI 920821..921525 (+) 705 WP_000646225.1 elongation factor P 5-aminopentanone reductase -
  E3S88_RS04540 (E3S88_04540) - 921630..922457 (+) 828 WP_000214890.1 YmfK family protein -
  E3S88_RS04545 (E3S88_04545) - 922476..922868 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  E3S88_RS04550 (E3S88_04550) pgsA 922902..923480 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  E3S88_RS04555 (E3S88_04555) - 923707..924858 (+) 1152 WP_124781484.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  E3S88_RS04560 (E3S88_04560) recA 925023..926066 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  E3S88_RS04565 (E3S88_04565) rny 926420..927979 (+) 1560 WP_001050913.1 ribonuclease Y -
  E3S88_RS04570 (E3S88_04570) - 928277..928492 (-) 216 WP_000026308.1 hypothetical protein -
  E3S88_RS04575 (E3S88_04575) - 928666..929463 (+) 798 WP_124781485.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37656.53 Da        Isoelectric Point: 4.8509

>NTDB_id=416373 E3S88_RS04560 WP_000368166.1 925023..926066(+) (recA) [Staphylococcus aureus strain UP_794]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLGISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=416373 E3S88_RS04560 WP_000368166.1 925023..926066(+) (recA) [Staphylococcus aureus strain UP_794]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGGGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
CGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCTGAGACTACACCAGGTGGACGTGCTT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCTTACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAACCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAGGTATATCTGATGGTGATGTTGAAGAAACAGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.435

95.389

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

70.206

97.695

0.686
  recA Streptococcus pneumoniae D39

64.943

100

0.651
  recA Streptococcus pneumoniae Rx1

64.943

100

0.651
  recA Streptococcus pneumoniae TIGR4

64.943

100

0.651
  recA Streptococcus pneumoniae R6

64.943

100

0.651
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Acinetobacter baumannii D1279779

64.368

100

0.646
  recA Streptococcus mutans UA159

64

100

0.646
  recA Streptococcus mitis SK321

64.553

100

0.646
  recA Acinetobacter baylyi ADP1

64.265

100

0.643
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae MS11

65.192

97.695

0.637
  recA Neisseria gonorrhoeae strain FA1090

65.192

97.695

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.897

97.695

0.634
  recA Streptococcus mitis NCTC 12261

66.066

95.965

0.634
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Helicobacter pylori 26695

63.636

98.271

0.625
  recA Helicobacter pylori strain NCTC11637

63.636

98.271

0.625
  recA Vibrio cholerae strain A1552

65.644

93.948

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.948

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.605

90.49

0.594
  recA Pseudomonas stutzeri DSM 10701

61.012

96.83

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.389

0.582
  recA Glaesserella parasuis strain SC1401

60.681

93.084

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.931

0.562

Multiple sequence alignment