Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RLO149_RS08945 Genome accession   NC_015730
Coordinates   1894928..1896007 (+) Length   359 a.a.
NCBI ID   WP_013961757.1    Uniprot ID   F7ZJJ8
Organism   Roseobacter litoralis Och 149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889928..1901007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLO149_RS08935 (RLO149_c018380) - 1891127..1892287 (+) 1161 WP_013961755.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  RLO149_RS08940 (RLO149_c018390) - 1892467..1894689 (+) 2223 WP_245538168.1 ATP-binding protein -
  RLO149_RS08945 (RLO149_c018400) recA 1894928..1896007 (+) 1080 WP_013961757.1 recombinase RecA Machinery gene
  RLO149_RS08950 (RLO149_c018410) alaS 1896153..1898810 (+) 2658 WP_013961758.1 alanine--tRNA ligase -
  RLO149_RS08955 (RLO149_c018420) - 1898815..1899102 (+) 288 WP_013961759.1 DUF1330 domain-containing protein -
  RLO149_RS08960 (RLO149_c018430) typA 1899135..1900952 (-) 1818 WP_013961760.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38327.87 Da        Isoelectric Point: 5.1560

>NTDB_id=41629 RLO149_RS08945 WP_013961757.1 1894928..1896007(+) (recA) [Roseobacter litoralis Och 149]
MATADLLSMNSKKSADKQKALDSALAQIERQFGKGSIMKLGTAGAVQDITASSTGSLGLDIALGIGGLPMGRIIEIYGPE
SSGKTTLTLHCVAEQQKAGGVCAFVDAEHALDPAYAKKLGIDLDELLISQPDTGEQALEITDTLVRSGAVNMVIVDSVAA
LTPKSELEGDMGDSSVGVQARLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRI
GALKDRDEVVGNHTRVKVVKNKVAAPFKQVEFDIMYGEGISKMGELLDLGVAAGVVDKSGSWFSYGDERIGQGRENAKGF
LRENVQMALEIEDKIRAAHGLDFDMPAHEKKADDDILEA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=41629 RLO149_RS08945 WP_013961757.1 1894928..1896007(+) (recA) [Roseobacter litoralis Och 149]
ATGGCAACGGCAGATCTACTCAGCATGAATAGCAAAAAATCCGCAGACAAACAAAAGGCGCTTGATTCCGCGCTGGCTCA
GATTGAGCGCCAGTTCGGCAAGGGCTCGATCATGAAATTGGGCACCGCGGGGGCCGTGCAGGACATCACGGCCAGCTCCA
CGGGCTCGTTGGGTCTTGATATCGCCTTGGGAATCGGCGGTCTTCCGATGGGTAGAATCATCGAGATCTATGGACCCGAA
AGTTCTGGTAAAACCACGCTGACCCTGCACTGTGTGGCAGAACAGCAAAAAGCGGGTGGCGTATGCGCCTTCGTGGACGC
CGAACATGCGCTGGACCCGGCATATGCGAAAAAGCTTGGTATCGATCTGGACGAGTTGTTGATCAGCCAACCTGATACCG
GGGAACAAGCGCTGGAGATCACTGATACGCTTGTGCGTTCCGGTGCCGTGAACATGGTGATTGTGGATTCGGTTGCCGCT
CTGACGCCGAAGTCCGAGCTTGAAGGCGACATGGGCGACAGTTCCGTTGGTGTGCAGGCCCGCCTGATGAGCCAGGCGAT
GCGCAAGCTGACAGGATCGATCAGCCGCAGCAACTGCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCA
TGTTCGGCTCGCCCGAGACGACAACGGGTGGTAACGCGCTTAAGTTCTACTCCTCCGTTCGGTTGGATATCCGGCGTATT
GGCGCACTGAAAGACCGCGACGAAGTCGTTGGCAACCACACGCGGGTCAAGGTTGTCAAAAACAAGGTTGCCGCACCCTT
CAAGCAAGTCGAATTTGATATCATGTACGGCGAAGGCATCTCAAAGATGGGCGAATTGCTGGATCTTGGGGTTGCCGCAG
GTGTGGTGGATAAATCCGGGTCGTGGTTCAGCTATGGCGATGAGCGTATCGGGCAGGGGCGCGAAAACGCCAAAGGTTTC
CTGCGTGAGAACGTCCAGATGGCGCTTGAGATCGAGGATAAGATCCGCGCGGCACATGGGCTTGATTTCGACATGCCGGC
ACATGAGAAAAAAGCAGACGACGACATACTTGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F7ZJJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.341

91.365

0.652
  recA Glaesserella parasuis strain SC1401

70.625

89.136

0.63
  recA Neisseria gonorrhoeae MS11

67.47

92.479

0.624
  recA Neisseria gonorrhoeae strain FA1090

67.47

92.479

0.624
  recA Neisseria gonorrhoeae MS11

67.47

92.479

0.624
  recA Pseudomonas stutzeri DSM 10701

69.255

89.694

0.621
  recA Acinetobacter baylyi ADP1

63.977

96.657

0.618
  recA Vibrio cholerae strain A1552

68.536

89.415

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.536

89.415

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

66.768

91.365

0.61
  recA Acinetobacter baumannii D1279779

68.224

89.415

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.757

94.986

0.596
  recA Helicobacter pylori strain NCTC11637

65.644

90.808

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.939

91.365

0.593
  recA Helicobacter pylori 26695

65.031

90.808

0.591
  recA Streptococcus mitis SK321

58.357

98.329

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.472

94.429

0.571
  recA Streptococcus pneumoniae R6

59.706

94.708

0.565
  recA Streptococcus pneumoniae TIGR4

59.706

94.708

0.565
  recA Streptococcus pneumoniae Rx1

59.706

94.708

0.565
  recA Streptococcus pneumoniae D39

59.706

94.708

0.565
  recA Streptococcus mitis NCTC 12261

59.412

94.708

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

58.824

94.708

0.557
  recA Streptococcus mutans UA159

57.349

96.657

0.554
  recA Streptococcus pyogenes NZ131

59.104

93.315

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

90.251

0.543

Multiple sequence alignment